CecileTK

Pinned Repositories

phylo-kernel-public
Code and data for: "Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences".
Language:R0 5 00
size-genetic-clusters
Code and data for "Estimating the reproduction number and transmission heterogeneity from the size distribution of clusters of identical pathogen sequences"
Language:R6 4 21
augur-build-sfs
the (in development) augur build for understanding influenza dynamics in Seattle
Language:Python0 0 00
ceciletk.github.io
Language:JavaScript00
dynamics-practical
Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
Language:R0 0 00
measles
Nextstrain build for measles virus
Language:Python00
monkeypox
Nextstrain build for monkeypox virus
Language:Python00
mpox-dynamics
Language:Jupyter Notebook0 0 00
mumps
Nextstrain build for mumps virus
Language:Python0 0 00
setup
Reproducible system setup
Language:Shell0 0 00

CecileTK's Repositories

CecileTK/augur-build-sfs
the (in development) augur build for understanding influenza dynamics in Seattle
Language:Python0 0 00
CecileTK/ceciletk.github.io
Language:JavaScript00
CecileTK/dynamics-practical
Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
Language:R0 0 00
CecileTK/measles
Nextstrain build for measles virus
Language:Python00
CecileTK/monkeypox
Nextstrain build for monkeypox virus
Language:Python00
CecileTK/mpox-dynamics
Language:Jupyter Notebook0 0 00
CecileTK/mumps
Nextstrain build for mumps virus
Language:Python0 0 00
CecileTK/setup
Reproducible system setup
Language:Shell0 0 00
CecileTK/tutorial-rr-identical-sequences
Tutorial on how to compute the relative risk of observing identical sequences for large sequence datasets
Language:R1 0
CecileTK/workflow-id-seq-by-pango
Language:Python