Pinned Repositories
cam_acq
Python project to control microscope through client-server program.
FucciSingleCellSeqPipeline
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model -- RNA-Seq analysis pipeline
HPA-Cell-Segmentation
HPA-competition
Human Protein Atlas image classification competition
HPA-competition-solutions
Team original solutions for the Human Protein Atlas image classification competition
Loc-CAT
The Cellular Annotation Tool
pipex
A pipeline to transform images into valuable analysis items
pytorch_integrated_cell
Integrated Cell project implemented in pytorch
SingleCellProteogenomics
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
subcell-embed
Codebase for training the SubCell models
CellProfiling's Repositories
CellProfiling/HPA-Cell-Segmentation
CellProfiling/HPA-competition-solutions
Team original solutions for the Human Protein Atlas image classification competition
CellProfiling/HPA-competition
Human Protein Atlas image classification competition
CellProfiling/SingleCellProteogenomics
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
CellProfiling/subcell-embed
Codebase for training the SubCell models
CellProfiling/pipex
A pipeline to transform images into valuable analysis items
CellProfiling/FucciSingleCellSeqPipeline
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model -- RNA-Seq analysis pipeline
CellProfiling/Loc-CAT
The Cellular Annotation Tool
CellProfiling/cam_acq
Python project to control microscope through client-server program.
CellProfiling/HPA-model-zoo
A collection of deep learning models for analyzing the Human Protein Atlas images.
CellProfiling/subcell-analysis
CellProfiling/HDCA-FetalLung-SpatialProteomics
Custom software written for analysis of spatial proteomics data from fetal lung acquired in the HDCA project.
CellProfiling/SubCellPortable
This is a convenient code wrapper to run Lundberg lab SubCell model in inference with your own images
CellProfiling/stable-diffusion
A latent text-to-image diffusion model
CellProfiling/bioe-postdoc-chalktalk
Website for the BioE Postdoc Chalk Talk
CellProfiling/camacq-plugins
Plugins for camacq
CellProfiling/cell-pro-template
This repository serves only as a Python template for new projects
CellProfiling/CellCyclePlottingDataframes
Dataframes for plotting the cell cycle data
CellProfiling/covid19ai.io
COVID19AI.IO -- An AI Model Repository for Fighting COVID-19
CellProfiling/cpias
:herb: Cell Profiling Image Analysis Server
CellProfiling/decode-experiments
Repository hosting protocol files and parameters for DECODE robot setup in the Lundberg Lab
CellProfiling/ell_code_template
CellProfiling/ellviewer
Simple and configurable layered viewer, serverless and zero-code configurable
CellProfiling/hpa_densenet
Running the Bestfitting Densenet model
CellProfiling/HPACellSegmentatorPortable
Just a rework of the HPA Cell Segmentator repository that works with modern and simple python libraries
CellProfiling/memento
A simple tool for sharing and annotate images
CellProfiling/MetabolismManuscript
custom code written for the analysis of the manuscript "Widespread enzyme expression variations underly diverse metabolic capacities within cell types"
CellProfiling/Micronucleidetection
Software to identify nuclei
CellProfiling/pytorch_zoo
This is for HPA-Cell_image-segmentation
CellProfiling/Squid