ChanghaoGong

ChanghaoGong's Stars

• MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software

  An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets

  6324

• BodenmillerGroup/IMC_NSCLC_CAF

  IMC analyis CAFs in NSCLC

  2

• stat115/Lab_2020

  Repository for all labs for STAT115 for 2020

  Language:HTML4419

• datawhalechina/leedl-tutorial

  《李宏毅深度学习教程》（李宏毅老师推荐👍，苹果书🍎），PDF下载地址：https://github.com/datawhalechina/leedl-tutorial/releases

  Language:Jupyter Notebook12.8k2.8k

• WZMIAOMIAO/deep-learning-for-image-processing

  deep learning for image processing including classification and object-detection etc.

  Language:Python22.2k7.9k

• pytorch/vision

  Datasets, Transforms and Models specific to Computer Vision

  Language:Python15.9k6.9k

• azizilab/starfysh

  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

  Language:Jupyter Notebook9312

• wehos/CellT

  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"

  Language:Python122

• THUDM/GraphMAE2

  GraphMAE2: A Decoding-Enhanced Masked Self-Supervised Graph Learner in WWW'23

  Language:Python12715

• RapidsAtHKUST/CommunityDetectionCodes

  Some overlapping community detection algorithms (Until 2016). by Yulin Che (https://github.com/CheYulin) for the PhD qualification exam (survey on community detection algorithms)

  Language:C++20291

• OmicsML/CellPLM

  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

  Language:Jupyter Notebook585

• OmicsML/awesome-deep-learning-single-cell-papers

  65184

• 6lyc/CDNMF

  Official implementation of our paper "Contrastive Deep Nonnegative Matrix Factorization for Community Detection", ICASSP 2024.

  Language:Python244

• bdy9527/SDCN

  Structural Deep Clustering Network

  Language:Python25872

• TheHermitman/CDMSG

  Community Detection with Graph Neural Network using Markov Stability

  Language:Python2

• FanzhenLiu/Awesome-Deep-Community-Detection

  Deep and conventional community detection related papers, implementations, datasets, and tools.

  47193

• awslabs/dgl-lifesci

  Python package for graph neural networks in chemistry and biology

  Language:Python707144

• mli/paper-reading

  深度学习经典、新论文逐段精读

  25.9k2.4k

• d2l-ai/d2l-zh

  《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

  Language:Python60.9k10.8k

• STOmics/StereoSiTE

  Spatial transcriptome analysis in python

  Language:Jupyter Notebook20

• STOmics/ST-GEARS

  A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors

  Language:Jupyter Notebook10

• ChanghaoGong/STutils

  scanpy extra function for STOmics

  Language:Python11

• msraredon/NICHES

  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling

  Language:HTML5013

• wangxiao5791509/MultiModal_BigModels_Survey

  [MIR-2023-Survey] A continuously updated paper list for multi-modal pre-trained big models

  27416

• ventolab/CellphoneDB

  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

  Language:Jupyter Notebook31651

• ludvigla/semla

  Language:R505

• YosefLab/Hotspot

  Language:Python8113

• STOmics/SAW

  Language:HTML13234

• QuKunLab/SPACEL

  Language:Python456

• matplotlib/cheatsheets

  Official Matplotlib cheat sheets

  Language:Python7.3k883