ChanghaoGong's Stars
MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
BodenmillerGroup/IMC_NSCLC_CAF
IMC analyis CAFs in NSCLC
stat115/Lab_2020
Repository for all labs for STAT115 for 2020
datawhalechina/leedl-tutorial
《李宏毅深度学习教程》(李宏毅老师推荐👍,苹果书🍎),PDF下载地址:https://github.com/datawhalechina/leedl-tutorial/releases
WZMIAOMIAO/deep-learning-for-image-processing
deep learning for image processing including classification and object-detection etc.
pytorch/vision
Datasets, Transforms and Models specific to Computer Vision
azizilab/starfysh
Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
wehos/CellT
An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
THUDM/GraphMAE2
GraphMAE2: A Decoding-Enhanced Masked Self-Supervised Graph Learner in WWW'23
RapidsAtHKUST/CommunityDetectionCodes
Some overlapping community detection algorithms (Until 2016). by Yulin Che (https://github.com/CheYulin) for the PhD qualification exam (survey on community detection algorithms)
OmicsML/CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
OmicsML/awesome-deep-learning-single-cell-papers
6lyc/CDNMF
Official implementation of our paper "Contrastive Deep Nonnegative Matrix Factorization for Community Detection", ICASSP 2024.
bdy9527/SDCN
Structural Deep Clustering Network
TheHermitman/CDMSG
Community Detection with Graph Neural Network using Markov Stability
FanzhenLiu/Awesome-Deep-Community-Detection
Deep and conventional community detection related papers, implementations, datasets, and tools.
awslabs/dgl-lifesci
Python package for graph neural networks in chemistry and biology
mli/paper-reading
深度学习经典、新论文逐段精读
d2l-ai/d2l-zh
《动手学深度学习》:面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。
STOmics/StereoSiTE
Spatial transcriptome analysis in python
STOmics/ST-GEARS
A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors
ChanghaoGong/STutils
scanpy extra function for STOmics
msraredon/NICHES
Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
wangxiao5791509/MultiModal_BigModels_Survey
[MIR-2023-Survey] A continuously updated paper list for multi-modal pre-trained big models
ventolab/CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
ludvigla/semla
YosefLab/Hotspot
STOmics/SAW
QuKunLab/SPACEL
matplotlib/cheatsheets
Official Matplotlib cheat sheets