ChaoChangmicro
I am a PHD candidate in NWAFU. My interest is about microbial ecology, eDNA and metagenomics.
CHINA
Pinned Repositories
Antibiotic-resistomes
Potential health risks of antibiotic resistomes in a floodplain ecosystems
args_oap
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
Biogeography-of-photosynthetic-microorganisms
CNPS.cycle
This is an R package for element cycle analysis using metagenomic data.
earthnetwork
Microbial co-occurrence network inferred from Earth Microbiome Project
eDITH-thur
MATLAB code and data supporting Carraro L, Mächler E, Wüthrich R, Altermatt F. Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems, Nature Communications (accepted), 2020.
LCA_BLAST_calculator
calculate the LCA for BLAST outputs
lulu
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
microbial-community-coalescence
Linking microbial community coalescence to ecological diversity, community assembly and species coexistence
Temperature-driven-deterministic-community-assembly-facilitates-the-coexistence
microbial biogeography
ChaoChangmicro's Repositories
ChaoChangmicro/CNPS.cycle
This is an R package for element cycle analysis using metagenomic data.
ChaoChangmicro/Antibiotic-resistomes
Potential health risks of antibiotic resistomes in a floodplain ecosystems
ChaoChangmicro/args_oap
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
ChaoChangmicro/Biogeography-of-photosynthetic-microorganisms
ChaoChangmicro/earthnetwork
Microbial co-occurrence network inferred from Earth Microbiome Project
ChaoChangmicro/eDITH-thur
MATLAB code and data supporting Carraro L, Mächler E, Wüthrich R, Altermatt F. Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems, Nature Communications (accepted), 2020.
ChaoChangmicro/LCA_BLAST_calculator
calculate the LCA for BLAST outputs
ChaoChangmicro/lulu
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
ChaoChangmicro/microbial-community-coalescence
Linking microbial community coalescence to ecological diversity, community assembly and species coexistence
ChaoChangmicro/Temperature-driven-deterministic-community-assembly-facilitates-the-coexistence
microbial biogeography
ChaoChangmicro/enmSdm
Faster, better, smarter ecological niche modeling and species distribution modeling
ChaoChangmicro/fluxweb
Development of an R pacakge that estimates fluxes in food webs
ChaoChangmicro/memusg
A 'time'-like utility for Unix that measures peak memory usage
ChaoChangmicro/mikropml_demo
ChaoChangmicro/modleR
An ecological niche model workflow based on dismo
ChaoChangmicro/qcmi
To explore biotic associations of microbes at the community level. See the detailed package tutorial (https://joshualiuxu.github.io/).
ChaoChangmicro/reference_database_creator
creating reference databases for amplicon sequencing
ChaoChangmicro/rivnet
An R-package allowing seamless extraction of river networks from Digital Elevation Models data
ChaoChangmicro/rstudiothemes
A curated list of RStudio themes found on Github
ChaoChangmicro/sdm_r_packages
A curated list of R packages used in species distribution modelling
ChaoChangmicro/ssn-short-course
ChaoChangmicro/tidyverse120
玩转数据处理120题—R语言tidyverse版本
ChaoChangmicro/tidyversity
🎓 Tidy tools for academics
ChaoChangmicro/Tools-Microbiome-Analysis
A list of R environment based tools for marker gene microbiome data exploration, statistical analysis and visualization
ChaoChangmicro/tutorials
Tutorials
ChaoChangmicro/warming-network-complexity-stability
Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
ChaoChangmicro/ZVHrcode