ChaoLi-Microbio

Environmental Microbiology

Pinned Repositories

args_oap
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
Language:Python00
canu
A single molecule sequence assembler for genomes large and small.
Language:C++00
EasyAmplicon
Easy Amplicon data analysis pipeline
Language:HTML00
EasyMetagenome
Easy Metagenome Pipeline
Language:HTML00
microeco
An R package for data analysis in microbial community ecology
Language:R00
PathoScope
Pathoscope: Species identification and strain attribution with unassembled sequencing data
Language:Python00
plassembler
Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
Language:Python00

ChaoLi-Microbio/microeco
An R package for data analysis in microbial community ecology
ChaoLi-Microbio/plassembler
Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
ChaoLi-Microbio/args_oap
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
ChaoLi-Microbio/EasyMetagenome
Easy Metagenome Pipeline
ChaoLi-Microbio/EasyAmplicon
Easy Amplicon data analysis pipeline
ChaoLi-Microbio/canu
A single molecule sequence assembler for genomes large and small.
ChaoLi-Microbio/PathoScope
Pathoscope: Species identification and strain attribution with unassembled sequencing data