ChaoPang

ChaoPang's Stars

• cumc-dbmi/cehrbert

  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks

  Language:Python3210

• mmcdermott/MEDS_transforms

  A simple set of MEDS polars-based ETL and transformation functions

  Language:Python226

• mikkelfo/CORE-BEHRT

  Language:Jupyter Notebook102

• knatarajan-lab/cehrbert_data

  The Spark ETL tools for generating pre-training and fine-tuning datasets for CEHR-BERT and CEHR-GPT

  Language:Python2

• Medical-Event-Data-Standard/meds_etl

  A collection of ETLs from common data formats to Medical Event Data Standard

  Language:Python246

• justin13601/ACES

  ACES: Automatic Cohort Extraction System for Event-Streams

  Language:Python272

• som-shahlab/mimic_tutorial

  Language:Python3

• som-shahlab/meds_reader

  Language:C++15

• CogStack/Foresight

  Deep Generative Modelling of Patient Timelines using Electronic Health Records

  Language:Jupyter Notebook548

• dsi-clinical-llm/clinical-llm-evaluation

  This repo is created to evaluate the LLMs on 4 tasks including Question-Answer (QA), Summarization, Name Entity Recognition (NER), and Relation Extraction (RE). The goal is to create a general framework to quickly evaluate any Causal Language Models against publicly available medical datasets.

  Language:Jupyter Notebook71

• huggingface/trl

  Train transformer language models with reinforcement learning.

  Language:Python10.5k1.4k

• OHDSI/Apollo

  [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)

  Language:Python134

• dplecko/CFA

  Causal Fairness Analysis

  Language:TeX134

• CausalAILab/NeuralCausalModels

  Neural Causal Model (NCM) implementation by the authors of The Causal Neural Connection.

  Language:Python234

• CausalAILab/NCMCounterfactuals

  Language:Python111

• OHDSI/ApolloR

  [Under development] An R package with functionality to help fit large models on data in the CDM

  Language:R32

• kuangliu/pytorch-cifar

  95.47% on CIFAR10 with PyTorch

  Language:Python6.1k2.2k

• all-of-us/curation

  Language:Python1634

• ilyas-it83/CloudComparer

  Compare the various managed cloud services offered by the major public cloud providers in the market.

  Language:SCSS1.5k1k

• molgenis/molgenis-legacy

  The MOLGENIS Software generator tool for creating Dynamic Software Infrastructure used in the Life Sciences

  Language:Java2019

• ChaoPang/molgenis-legacy

  The MOLGENIS Software generator tool for creating Dynamic Software Infrastructure used in the Life Sciences

  Language:Java1

• ChaoPang/molgenis_apps-legacy

  MOLGENIS Advanced Application and Computation Framework for the Life Sciences

  Language:Java1

• molgenis/molgenis_apps-legacy

  MOLGENIS Advanced Application and Computation Framework for the Life Sciences

  Language:Java1923