Pinned Repositories
AiLearning
AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP
Andrew-NG-Meachine-Learning
coursera中Andrew Ng的meachine learning的所有编程测验的原文件
bactopia
A flexible pipeline for complete analysis of bacterial genomes
bamdst
a lightweight bam file depth statistical tool
bioworkflows
In-house computational biology workflows at Columbia Neurology
cfDNApipe
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
Chao-s-house
data
Duplex-Seq-Pipeline
A standalone end-to-end data analysis pipeline for Duplex Sequencing
hello-algorithm
🙈🙉🙊 本项目包括：1、我写的三十万字图解算法题典 2、100 张 IT 相关超清思维导图 3、100 篇大厂面经汇总 4、各语言编程电子书 100 本 5、English version supported !!! 🚀🚀 国人项目上榜首不易，右上角助力一波！干就对了，奥利给 ！🚀🚀
ChaoXianSen's Repositories
ChaoXianSen/Duplex-Seq-Pipeline
A standalone end-to-end data analysis pipeline for Duplex Sequencing
ChaoXianSen/hello-algorithm
🙈🙉🙊 本项目包括：1、我写的三十万字图解算法题典 2、100 张 IT 相关超清思维导图 3、100 篇大厂面经汇总 4、各语言编程电子书 100 本 5、English version supported !!! 🚀🚀 国人项目上榜首不易，右上角助力一波！干就对了，奥利给 ！🚀🚀
ChaoXianSen/AiLearning
AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP
ChaoXianSen/bactopia
A flexible pipeline for complete analysis of bacterial genomes
ChaoXianSen/cfDNApipe
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
ChaoXianSen/data
ChaoXianSen/fgbio
Tools for working with genomic and high throughput sequencing data.
ChaoXianSen/gatk
Official code repository for GATK versions 4 and up
ChaoXianSen/gencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
ChaoXianSen/Global-Soil-Virome
Supporting code for manuscript: "Ecological/environmental drivers of global soil virome diversity"
ChaoXianSen/gut_virome_db
ChaoXianSen/IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
ChaoXianSen/LLNEXT_pilot
We studied the dynamics of the maternal gut virome during and after pregnancy, the infant gut virome during early life, with a particular focus on the transmission of viral strains from mothers to their infants.
ChaoXianSen/Machine-learning-learning-notes
周志华《机器学习》又称西瓜书是一本较为全面的书籍，书中详细介绍了机器学习领域不同类型的算法(例如：监督学习、无监督学习、半监督学习、强化学习、集成降维、特征选择等)，记录了本人在学习过程中的理解思路与扩展知识点，希望对新人阅读西瓜书有所帮助！
ChaoXianSen/metagenome_ana_pipeline
ChaoXianSen/MGV
Supporting code for uncultivated gut virus manuscript
ChaoXianSen/NanoSeq
Analysis software for NanoSeq experiments
ChaoXianSen/NGS-analysis
二代测序数据分析
ChaoXianSen/pathongs
Pathogen NGS Documentary
ChaoXianSen/Pisces
Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
ChaoXianSen/pumpkin-book
《机器学习》（西瓜书）公式推导解析，在线阅读地址：https://datawhalechina.github.io/pumpkin-book
ChaoXianSen/Python-Knowledge-Handbook
Python Knowledge Handbook by Python数据之道， website： http://liyangbit.com/
ChaoXianSen/python3-cookbook
《Python Cookbook》 3rd Edition Translation
ChaoXianSen/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
ChaoXianSen/share
ChaoXianSen/sheng-xin-xiao-bai-yu-2021
历史文档备份（2021年）
ChaoXianSen/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
ChaoXianSen/sinvict
SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
ChaoXianSen/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
ChaoXianSen/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets