Pinned Repositories
alluvial_diagram
A python script for generating "alluvial" styled bipartite diagrams, using matplotlib and numpy
AMR_ABM
AMR_ABM2
Estimating nosocomial transmission of micro-organisms in hospital settings using patient records and culture data
AMR_environmental
How does environmental (fomite) reservoirs shape nosocomial transmission?
AMR_modeling
Mathematical models of antimicrobial resistance pathogens in hospitals
AppliedStochasticAnalysis
covid19_ensemble_forecast
DiseaseRiskAwareness_ModulatesTransmission
IMD_RetrospectiveForecasting
Inference of transmission dynamics and retrospective forecast of invasive meningococcal disease.
SIR_macroeconomy
ChaosDonkey06's Repositories
ChaosDonkey06/covid19_ensemble_forecast
ChaosDonkey06/SIR_macroeconomy
ChaosDonkey06/DiseaseRiskAwareness_ModulatesTransmission
ChaosDonkey06/alluvial_diagram
A python script for generating "alluvial" styled bipartite diagrams, using matplotlib and numpy
ChaosDonkey06/biorxiv-inspired-latex-style
A Latex style and template for paper preprints (based on NIPS style)
ChaosDonkey06/cocoapi
COCO API - Dataset @ http://cocodataset.org/
ChaosDonkey06/code-snippets-python
A collection of code snippets in python that might be useful for others.
ChaosDonkey06/covid_IL
ChaosDonkey06/CurveFit
Generic curve fitting package with nonlinear mixed effects model
ChaosDonkey06/DELPHI
DELPHI: The Epidemiological model underlying COVIDAnalytics
ChaosDonkey06/download_chirt
ChaosDonkey06/fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
ChaosDonkey06/Fast_Sentence_Embeddings
Compute Sentence Embeddings Fast!
ChaosDonkey06/IBIO4680
ChaosDonkey06/jaimcmc
My MCMC implementation :)!
ChaosDonkey06/learning_julia
ChaosDonkey06/Multi-Pathogen_ILI_Forecast
MATLAB Code and data fore paper: Sen Pei & Jeffrey Shaman, Aggregating forecasts of multiple respiratory pathogens supports more accurate forecasting of influenza-like illness, PLoS Computational Biology. 2020.
ChaosDonkey06/NODE_Tutorial
ChaosDonkey06/numpyro
Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
ChaosDonkey06/pomp_example
ChaosDonkey06/pySankey
create sankey diagrams with matplotlib
ChaosDonkey06/readme2tex
Renders TeXy Math for Github Readmes
ChaosDonkey06/SARSCOV2NGS
SARS-CoV-2 NGS and phylodynamic inference
ChaosDonkey06/scales_human_mobility
ChaosDonkey06/scikit-mobility
scikit-mobility: mobility analysis in Python
ChaosDonkey06/Scraping_WJ
ChaosDonkey06/stnn
Code for the paper "Spatio-Temporal Neural Networks for Space-Time Series Modeling and Relations Discovery"
ChaosDonkey06/wav2letter.pytorch
A fully convolution-network for speech-to-text, built on pytorch.