CharlesJB/ENCODExplorer

Issues

• package failing in Bioc 3.14

  #57 opened 3 years ago by vjcitn
  0

• Not available for new R (4.0.2)

  #54 opened 3 years ago by gyzsolt91
  3

• ENCODExplorer not compatible with R (version 4.1.0) nor Bioconductor (v 3.14)

  #56 opened 3 years ago by new2code2021
  0

• Support Drosophila melanogaster?

  #52 opened 5 years ago by ashleymaeconard
  5

• HiC question

  #55 opened 4 years ago by jameskozubek
  0

• error in metadata table

  #53 opened 5 years ago by vjcitn
  3

• missing function queryConsensusPeaks in Bioc v.2.10.0

  #51 opened 5 years ago by gaiatek
  2

• Error in clean_column from searchEncode

  #50 opened 5 years ago by ericfournier2
  4

• some metadata are not up to date?

  #40 opened 5 years ago by crazyhottommy
  6

• downloadEncode with force == FALSE

  #38 opened 5 years ago by kapka2
  2

• Database is not completed?

  #43 opened 5 years ago by hgu0717
  2

• R version

  #42 opened 5 years ago by sagincg
  1

• Impossible to search for items with value NA

  #36 opened 5 years ago by ericfournier2
  0

• some funcitions can not be found

  #33 opened 5 years ago by Solipugids
  4

• downloadEncode error

  #39 opened 5 years ago by r-lehtonen
  1

• downloadEncode() error 'curl' call had nonzero exit status

  #48 opened 5 years ago by lmurba
  5

• prepare_ENCODEdb breaks on empty tables

  #44 opened 5 years ago by ericfournier2
  0

• downloadEncode(force=FALSE) has non-intuitive behaviour.

  #47 opened 6 years ago by ericfournier2
  0

• Changes to ENCODE metadata

  #45 opened 6 years ago by ericfournier2
  0

• Inconsistencies in replicate mapping

  #46 opened 6 years ago by ericfournier2
  0

• encode_df is not used by default when called from a package

  #34 opened 7 years ago by ericfournier2
  0

• queryEncode with non-NULL df variable

  #31 opened 7 years ago by kapka2
  0

• Downloading already existing files will cause an error

  #29 opened 7 years ago by ericfournier2
  0

• downloadEncode fails if the download directory is not the current directory.

  #27 opened 8 years ago by ericfournier2
  1

• shinyEncode sources a file that does not exist

  #26 opened 8 years ago by ericfournier2
  0

• Update documentation with correct file formats

  #9 opened 8 years ago by CharlesJB
  0

• createDesign ctrl

  #21 opened 8 years ago by louisgendron26
  0

• absolute files

  #14 opened 8 years ago by biterbilen
  2

• Find a better fix for searchEncode new return values

  #10 opened 8 years ago by CharlesJB
  0

• searchEncode returns NA rows

  #2 opened 9 years ago by CharlesJB
  1

• ENCODE portal now have dataset from Roadmap

  #7 opened 9 years ago by CharlesJB
  1

• queryEncode - Add support for boolean operators.

  #8 opened 9 years ago by CharlesJB
  0

• Check if new datasets are available on ENCODE portal

  #6 opened 9 years ago by CharlesJB
  0

• Error in Bioconductor build

  #3 opened 9 years ago by CharlesJB
  5