Pinned Repositories
ArabidopsisSubmergence
This is the analysis of a subset of Ying's Arabidopsis leaf RNASeq data. Data selected on wt and gad mutants with optimal conditions. (Thesis chapter 5)
BarleyGCRNASeq
This is the analysis of barley stomata complex enriched RNASeq data with ABA and GABA treatment. (Thesis chapter 4)
DiRT
A pipeline for detecting dicistronic transcripts from a given RNASeq data.
GO_summary
GO summary update generation along with go.db updates. This summary is used for based on GO summary from Stevie Pederson at https://uofabioinformaticshub.github.io/summaries2GO/MakeSummaries
RNASeq-snakemake
snakemake_template
A small template to ease setting up new Snakemake workflows capable of submitting jobs to a Slurm cluster such as phoenix.
SAI-app
CharlotteSai's Repositories
CharlotteSai/ArabidopsisSubmergence
This is the analysis of a subset of Ying's Arabidopsis leaf RNASeq data. Data selected on wt and gad mutants with optimal conditions. (Thesis chapter 5)
CharlotteSai/BarleyGCRNASeq
This is the analysis of barley stomata complex enriched RNASeq data with ABA and GABA treatment. (Thesis chapter 4)
CharlotteSai/DiRT
A pipeline for detecting dicistronic transcripts from a given RNASeq data.
CharlotteSai/GO_summary
GO summary update generation along with go.db updates. This summary is used for based on GO summary from Stevie Pederson at https://uofabioinformaticshub.github.io/summaries2GO/MakeSummaries
CharlotteSai/RNASeq-snakemake
CharlotteSai/snakemake_template
A small template to ease setting up new Snakemake workflows capable of submitting jobs to a Slurm cluster such as phoenix.