Chebuu

Pinned Repositories

3VTE-model
Molecular dynamics simulation of a FAD-linked oxidocyclase
Language:Jupyter Notebook0 2 10
A6P6V9-model
Amber scripts to simulate a homology model of a berberine-bridge enzyme and its substrate
Language:Python0 2 20
Bauer2017-pgSQL
PL/pgSQL queries against the MIMIC-III v1.4 database used to recreate the dataset from Bauer et al. 2017.
Language:TSQL3 1 00
CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
Language:Nextflow1 1 00
cyclodex-model
Modeling cyclodextrins as excipients for certain hydrophobic compounds
Language:Jupyter Notebook1 2 10
fetch_compounds
Avoid PubChemPy TimeoutError due to PUG data limits
Language:Python21
MHC-II
Simple MHC-II epitope model
Language:R1 2 01
polydex
Sugar macrocycle assembled from SMILES strings
Language:Python0 2 10
scFv-model
Affinity maturation of antibody variable fragments
Language:Python2 2 72
sugammadex-model
Language:Jupyter Notebook00

Chebuu's Repositories

Chebuu/aa_stat
AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.
Language:Python1 0
Chebuu/alpine
A rugged, minimal framework for composing JavaScript behavior in your markup.
Language:JavaScript1 0
Chebuu/biomedical-knowledge-mining-book
:books: Biomedical knowledge mining using GOSemSim and clusterProfiler
Language:TeX1 0
Chebuu/clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters
Chebuu/cookiecutter-cms
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
Chebuu/cpptraj
Biomolecular simulation trajectory/data analysis.
Language:C++1 0
Chebuu/DPCMNE
Detecting protein complexes from protein-protein interaction networks via multi-level network embedding
Language:Roff1 0
Chebuu/DRKG
A knowledge graph and a set of tools for drug repurposing
Language:Jupyter Notebook1 0
Chebuu/foa
Language:R2 0
Chebuu/GraphSol
Language:Python1 0
Chebuu/haplotype-map
A library for visualizing haplotype data in the form a colored matrix.
Language:JavaScript1 0
Chebuu/HPV-Serovars
Discriminating HPV clinical variants by DNA sequence
Language:R2 0
Chebuu/ingress-nginx
NGINX Ingress Controller for Kubernetes
Language:Go1 0
Chebuu/lab-website-template
(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
Chebuu/molecular_rectifier
Given an RDKit molecule that does not sanitise, correct it until it does
Language:Python1 0
Chebuu/MolRep
MolRep: A Deep Representation Learning Library for Molecular Property Prediction
Language:Python1 0
Chebuu/networkx
Network Analysis in Python
Language:Python1 0
Chebuu/OpenAttack
An Open-Source Package for Textual Adversarial Attack.
Language:Python1 0
Chebuu/OpenNE
An Open-Source Package for Network Embedding (NE)
Language:Python1 0
Chebuu/opentrons_designer_beta_test
Opentrons protocol created with the Protocol Designer web app
2 0
Chebuu/p3_fqutils
Language:Python1 0
Chebuu/PhysiCell-Jupyter-GUI
Template Jupyter notebook for PhysiCell-powered nanoHUB apps
Language:C++1 0
Chebuu/ReactomeContentService4R
R Interface for Reactome data
Chebuu/ReactomeGraph4R
R package for interfacing with a Reactome Graph Database
Chebuu/release-jenkins-utils
Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release
Language:Groovy1 0
Chebuu/SARS2-ORF3a-Hs
Chebuu/simple-server
A simple http server
Language:JavaScript1 0
Chebuu/SOAP
Python SOAP framework for calculating statistically optimized atomic potentials
Language:Python1 0
Chebuu/toolchain
Toolchain and libraries for C/C++ programming on the TI-84+ CE calculator series
Language:Assembly1 0
Chebuu/vitals
📊 A tiny macOS process monitor
Language:Swift1 0