/PUM_study

Code to analyze RNA-seq, BRIC-seq, RIP-seq

Primary LanguageJupyter Notebook

PUM_study

Python codes (jupyter notebook) to analyze RNA-seq, BRIC-seq, RIP-seq.

The results are presented at https://www.biorxiv.org/content/early/2018/08/08/387381

PUM_RIP-seq.ipynb

This code draws scatter plots of RIP-seq to analyze fold-enrichement of PUM-binding transcripts.

in_silico_screening_of_RNAseq.ipynb & in_silico_screening_of_RNAseq_for_UPF1.ipynb

Code to perform in silico screening.