- Description
- Agenda
- Instructors
- All presentations are located in this repository.
This repository contains all the presentations and training material used for the CIML Summer Institute. To work with the material, remember to CLONE this repo.
All times are in Pacific time.
TIME (Pacific time) | TOPIC | PRESENTER |
---|---|---|
9:00 AM - 9:20 AM | 1.1 Welcome & Orientation | Mary Thomas |
9:20 AM – 9:50 AM | 1.2 Access, Accounts, Login, Environment, Expanse User Portal | Mary Thomas |
9:50 AM – 10:10 AM | 1.3 Running Jupyter Notebooks on Expanse | Marty Kandes |
10:10 AM – 10:30 AM | Q&A, Wrap-up | All |
TIME (Pacific time) | TOPIC | PRESENTER |
---|---|---|
8:00 AM – 8:05 AM | 2.1 Quick Welcome | Mary Thomas |
8:05 AM – 9:05 AM | 2.2 Introduction HPC/Cyberinfrastructure | Robert Sinkovits |
9:05 AM – 10:05 AM | 2.3 CPU Computing - Hardware, Architecture, Software, Running Jobs | Mary Thomas |
10:05 AM – 11:35 AM | 2.4 Data Management and File Systems | Marty Kandes |
11:35 AM – 12:05 PM | Break/Lunch | |
12:05 PM – 1:50 PM | 2.5 GPU Computing - Hardware architecture and software infrastructure | Andreas Goetz |
12:05 PM – 1:50 PM | Q&A, Wrap-up | All |
TIME (Pacific time) | TOPIC | PRESENTER |
---|---|---|
8:00 AM – 8:05 AM | 3.1 Quick Welcome | Mary Thomas |
8:05 AM – 9:15 AM | 3.2 Introduction to Singularity: Containers for Scientific and High-Performance Computing |
Marty Kandes |
9:15 AM – 11:00 AM | 3.3 CONDA Environments and Jupyter Notebook on Expanse: Scalable & Reproducible Data Exploration and ML | Peter Rose |
11:00 AM – 11:30 AM | Break/ Lunch | |
11:30 AM – 11:45 AM | 3.4 Machine Learning (ML) Overview Session was skipped, but resources are still availabe |
Mai Nguyen |
11:45 AM – 12:15 PM | 3.5 R on HPC Demo | Paul Rodriguez |
12:15 PM – 2:15 PM | 3.6 Spark | Mai Nguyen |
TIME (Pacific time) | TOPIC | PRESENTER |
---|---|---|
8:00 AM – 8:05 AM | 4.1 Quick Welcome | Mary Thomas |
8:05 AM – 9:05 AM | 4.2 Intro to NN/CNN | Paul Rodriguez |
9:05 AM – 10:05 AM | 4.3 Deep Learning | Paul Rodriguez |
10:05 AM – 10:50 AM | 4.4 Deep Learning Layers and Models | Mai Nguyen |
10:55 AM – 11:25 AM | Break/Lunch | |
11:25 AM – 12:25 PM | 4.5 Deep Learning Transfer Learning | Mai Nguyen |
12:25 PM – 1:25 PM | 4.6 Deep Learning – Other topics | Paul Rodriguez |
1:25 PM – 2:00 PM | Q&A, wrap-up |
Name | Title | Contact |
---|---|---|
Andreas Goetz, Ph.D. | Research Scientist, Principal Investigator | awgoetz at ucsd.edu |
Marty Kandes Ph.D. | Computational and Data Science Research Specialist | mkandes at ucsd.edu |
Mai Nguyen Ph.D. | Lead for Data Analytics | mhnguyen at ucsd.edu |
Paul Rodriguez Ph.D. | Computational Data Scientist | p4rodriguez at ucsd.edu |
Peter Rose Ph.D. | Director for Structural Bioinformatics Laboratory | pwrose at ucsd.edu |
Robert Sinkovits Ph.D. | Director of Education and Training | rssinkovits at ucsd.edu |
Mary Thomas Ph.D. | Director of CIML, Computational Data Scientist, HPC Trainer | mpthomas at ucsd.edu |