A set of extended classes based on the microeco package
Install mecodev from github.
# If devtools package is not installed, first install it
install.packages("devtools")
devtools::install_github("ChiLiubio/mecodev")If the installation from github is failed online, download the package first, then install it locally.
devtools::install_local("mecodev-master.zip")See the mecodev part of tutorial (https://chiliubio.github.io/microeco_tutorial/mecodev-package.html).
Chi Liu, Yaoming Cui, Xiangzhen Li, Minjie Yao, microeco: an R package for data mining in microbial community ecology, FEMS Microbiology Ecology, Volume 97, Issue 2, February 2021, fiaa255. https://doi.org/10.1093/femsec/fiaa255
We welcome any contribution ! Any idea/suggestion will be considered. By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.
- Zhang et al. Local community assembly mechanisms shape soil bacterial β diversity patterns along a latitudinal gradient. Nat Commun 11, 5428 (2020); doi:10.1038/s41467-020-19228-4.
- Liu et al. microeco: an R package for data mining in microbial community ecology, FEMS Microbiology Ecology, Volume 97, Issue 2, February 2021, fiaa255.
- Li et al. An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data. Microbiome, (2019) 7:118; doi:10.1186/s40168-019-0729-z.