/cov-ldsc

largely for pig genome

Primary LanguagePythonOtherNOASSERTION

Reproduce analyses in the cov-LDSC manuscript

  • ldscore: scripts used for running cov-LDSC to obtain LD scores
  • example: example files used in demo
  • SIGMA_covLDscore: cov-LD scores calculated using MAF >=5% genotyped SNPs in SIGMA cohort (hg19) with 20cM window size.
  • manuscript: data and scripts to reproduce the result in the manuscript

For more tutorials and vignettes, check out the cov-LDSC github page