/Pneuma

Eukaryotic genome annotation using gated recurrent units

Primary LanguagePythonMIT LicenseMIT


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About

Pneuma means "breath" in Latin. This is a eukaryotic genome annotation pipeline that is designed to be trained and run, with a neural network backend. It is work in progress and verification measures have yet to be added.

Usage

Visit config.json to edit and download the sequences (in FASTA format) and annotations (in GTF, GFF or GFF3 format)

Current models

Ustilago maydis - assembly