These scripts are for analyzing diffusion data with MRtrix (www.mrtrix.org)
updated_MRtrix_Preproc.sh is a function that requires the raw diffusion image, fieldmap, bvec and bval files for the diffusion and fieldmap images, and an anatomical image.
QC_mrview.sh should be run after updated_MRtrix_Preproc.sh for quality checks