Pinned Repositories
AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
aml2019
The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML).
Anno
annoE2G
AnnoENSG2GENE
Convert Genecode ID to Gene Symbol
datasciencecoursera-2
Leek Datasharing
Getcounts
After Mapping by STAR or Hiseq2, Collect ReadsPerGene.out.tab files into one table depending on specific strand seq for DEseq2 analysis
gg.gap
Easy to define segments in y-axis for 'ggplot2'.
nsfc
xenaToD
Xenacounts to DEseq2
ChrisLou-bioinfo's Repositories
ChrisLou-bioinfo/AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
ChrisLou-bioinfo/beataml2_manuscript
Workflow to reproduce results and figures for the second BeatAML manuscript
ChrisLou-bioinfo/circtools
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
ChrisLou-bioinfo/CIRI-deep
ChrisLou-bioinfo/ColabFold
Making Protein folding accessible to all via Google Colab!
ChrisLou-bioinfo/CombFold
ChrisLou-bioinfo/covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
ChrisLou-bioinfo/cryodrgn
Neural networks for cryo-EM reconstruction
ChrisLou-bioinfo/DockingPie
A Consensus Docking Plugin for PyMOL
ChrisLou-bioinfo/facefusion
Next generation face swapper and enhancer
ChrisLou-bioinfo/GLASSx
GLASS consortium
ChrisLou-bioinfo/HAMLET
RNA-seq pipeline for AML diagnostics developed in collaboration with the LUMC Hematology department
ChrisLou-bioinfo/km
km : a software for RNA-seq investigation using k-mer decomposition
ChrisLou-bioinfo/Langchain-Chatchat
Langchain-Chatchat（原Langchain-ChatGLM）基于 Langchain 与 ChatGLM 等语言模型的本地知识库问答 | Langchain-Chatchat (formerly langchain-ChatGLM), local knowledge based LLM (like ChatGLM) QA app with langchain
ChrisLou-bioinfo/localcolabfold
ColabFold on your local PC
ChrisLou-bioinfo/nsfcsearch
国家自然科学基金查询
ChrisLou-bioinfo/oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
ChrisLou-bioinfo/PANDORA
MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
ChrisLou-bioinfo/ParaFold
Open source code for AlphaFold.
ChrisLou-bioinfo/ParallelFold
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
ChrisLou-bioinfo/primer3
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
ChrisLou-bioinfo/RFdiffusion
Code for running RFdiffusion
ChrisLou-bioinfo/ROSE
ROSE: RANK ORDERING OF SUPER-ENHANCERS
ChrisLou-bioinfo/RoseTTAFold2NA
RoseTTAFold2 protein/nucleic acid complex prediction
ChrisLou-bioinfo/scAML
Codes and supplementary info from Velasco-Hernandez et al
ChrisLou-bioinfo/ScanExitron
A computational workflow for exitron splicing identification
ChrisLou-bioinfo/shinymanager
Simple and secure authentification mechanism for single shiny applications.
ChrisLou-bioinfo/stable-diffusion-webui
Stable Diffusion web UI
ChrisLou-bioinfo/STAR-Fusion
STAR-Fusion codebase
ChrisLou-bioinfo/youtube-dl
Command-line program to download videos from YouTube.com and other video sites