Associated code for: [Rapid, simultaneous increases in the effective sizes of adaptively divergent yellow perch (Perca flavescens) populations]
This repository contains the associated scripts to run the analysis for the paper [Rapid, simultaneous increases in the effective sizes of adaptively divergent yellow perch (Perca flavescens) populations]
- gatk* files: scripts for variant calling using GATK
- gone* files: scripts for reconstructing demographic history using GONE
- stairway* files: scripts for reconstructing demographic history using Stairway Plot 2
- yellowperch* files: scripts for calculating population genetic parameters and making plots