Pinned Repositories
bamcount_galaxy
bioconda-recipes
Conda recipes for the bioconda channel.
bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
bwtool
A tool for bigWig files.
megadepth
BigWig and BAM utilities
monorail_unifier_galaxy
aggregator tool for multiple monorail pump outputs
ncbi_indexing
snappening
snaptron
fast webservices based query tool for large sets of genomic features
snaptron-experiments
contains code and scripts to re-create analysis function experiments from the Snaptron paper
ChristopherWilks's Repositories
ChristopherWilks/megadepth
BigWig and BAM utilities
ChristopherWilks/snaptron
fast webservices based query tool for large sets of genomic features
ChristopherWilks/snaptron-experiments
contains code and scripts to re-create analysis function experiments from the Snaptron paper
ChristopherWilks/ncbi_indexing
ChristopherWilks/gffcompare
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
ChristopherWilks/monorail_unifier_galaxy
aggregator tool for multiple monorail pump outputs
ChristopherWilks/snappening
ChristopherWilks/bamcount_galaxy
ChristopherWilks/bioconda-recipes
Conda recipes for the bioconda channel.
ChristopherWilks/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
ChristopherWilks/bwtool
A tool for bigWig files.
ChristopherWilks/ChristopherWilks.github.io
public blog
ChristopherWilks/gclib
GCLib - Genomic C(++) library of reusable code for bioinformatics projects
ChristopherWilks/hisat
Fast spliced aligner with low memory requirements
ChristopherWilks/jhu-thesis-template
JHU Thesis Template
ChristopherWilks/juncr
ChristopherWilks/ld_preload_tutorial
Overview of how to use LD_PRELOAD using ZLIB wrapper for ZSTD compression
ChristopherWilks/libbf
:dart: Bloom filters for C++11
ChristopherWilks/Lighter
Fast and memory-efficient sequencing error corrector
ChristopherWilks/monorail_dm_galaxy
Index DataManager for Monorail pipeline
ChristopherWilks/monorail_galaxy
ChristopherWilks/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
ChristopherWilks/open-data-registry
A registry of publicly available datasets on AWS
ChristopherWilks/Rcorrector
Error correction for Illumina RNA-seq reads
ChristopherWilks/SciScript-Python
Python libraries for SciScript, Jupyter Notebooks
ChristopherWilks/sliceit
python client for web services offering segmental access to genomics sequence/alignments.
ChristopherWilks/SnaptronUI
A webapp frontend to query exon-exon junction data via Snaptron
ChristopherWilks/squeakr
Squeakr: An Exact and Approximate k -mer Counting System
ChristopherWilks/torch
ChristopherWilks/zstd
Zstandard - Fast real-time compression algorithm