Pinned Repositories
abcd
awesome
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
Brain_genomic_data
Brain-related -omics data
BrainSeq_Phase1
code from brainseq phase 1 paper
brainseq_phase2
BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
CoxGWAS
DEGlist.R
The R code was supplied to analyze the differential expression gene list in age, gender and brain region
JCPackage
Adjust for positional and batch effects using ComBat
lab-pipelines
这里是所有分析汇总流程
temporal-brain-expression
Scripts to analyze spatio temporal brain expression of BrainSpan Developmental Transcriptome data
ChuanJ's Repositories
ChuanJ/DEGlist.R
The R code was supplied to analyze the differential expression gene list in age, gender and brain region
ChuanJ/JCPackage
Adjust for positional and batch effects using ComBat
ChuanJ/lab-pipelines
这里是所有分析汇总流程
ChuanJ/abcd
ChuanJ/awesome
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
ChuanJ/Brain_genomic_data
Brain-related -omics data
ChuanJ/BrainSeq_Phase1
code from brainseq phase 1 paper
ChuanJ/brainseq_phase2
BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
ChuanJ/CoxGWAS
ChuanJ/DEGlist
The R code was supplied to analyze the differential expression gene list in age, gender and brain region
ChuanJ/DevRhesusLMD
Non-human primate brain development gene expression
ChuanJ/DiagrammeR
Graph and network visualization using tabular data in R
ChuanJ/DRAMS
A tool to Detect and Re-Align Mixed-up Samples based on multi-omics data
ChuanJ/flair
Full-Length Alternative Isoform analysis of RNA
ChuanJ/fusion_twas
methods for functional summary-based imputation
ChuanJ/GENEX-FB2
ChuanJ/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
ChuanJ/ldsc
LD Score Regression (LDSC)
ChuanJ/macrophage-tuQTLs
ChuanJ/NuMetRRBS
ChuanJ/outrigger
Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
ChuanJ/PEC_DEV
ChuanJ/psichomics
Interactive R package to quantify, analyse and visualise alternative splicing data
ChuanJ/qtltools
A complete tool set for molecular QTL discovery and analysis
ChuanJ/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
ChuanJ/SCZEWAS
ChuanJ/Shared-molecular-neuropathology-across-major-psychiatric-disorders-parallels-polygenic-overlap
ChuanJ/test
ChuanJ/TWAS-plotter
R script to make Manhattan-style plot for TWAS
ChuanJ/workshop-epigenomics-RTDs
workshop website on readthedocs