Long Covid and PASC Studyathon - Study package
Package overview
This package contains all the required code to run the first package for the study on Long Covid and PASC taking place in Oxford, April 2023.
Package extraction
You can clone this repository in your console like so, from cmd:
git clone git@github.com:oxford-pharmacoepi/LongCovidStudyathon_W1.gitor directly download it as a .zip file into your computer, from the menu above.
How to use it
You should only need to use the file CodetoRun.R in the main folder.
First fill all the ... with the information from your database, and change
the required variables (dates, names and database information availability)
to suit your particular needs.
When you run that script, the whole code will start running. It will first
instantiate the cohorts and then calculate the incidences.
If you re-run the code and the cohorts are already instantiated, you can set
instantiateCohorts = FALSE so as to not repeat long calculations.
Results
All the results will be zipped into a folder called [your database name]_Results.