ChunqiJIANG

ChunqiJIANG's Stars

• erikgahner/awesome-ggplot2

  A curated list of awesome ggplot2 tutorials, packages etc.

  1.6k167

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.1k607

• chklovski/CheckM2

  Assessing the quality of metagenome-derived genome bins using machine learning

  Language:Scilab16519

• rcedgar/muscle

  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

  Language:C++19222

• bbuchfink/diamond

  Accelerated BLAST compatible local sequence aligner.

  Language:C++1k182

• tseemann/prokka

  :zap: :aquarius: Rapid prokaryotic genome annotation

  Language:Perl823225

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++28128

• bawee/bwast

  Command line BLAST made-easy

  Language:Python41

• rougier/scientific-visualization-book

  An open access book on scientific visualization using python and matplotlib

  Language:Python10.7k986

• qiime2/qiime2

  Official repository for the QIIME 2 framework.

  Language:Python469237

• ChunqiJIANG/ChunqiJIANG.github.io

  This is Chunqi Jiang's academic personal websites, forked from mmistakes/minimal-mistakes

  Language:JavaScript1

• voutcn/megahit

  Ultra-fast and memory-efficient (meta-)genome assembler

  Language:C++589135

• rrwick/Trycycler

  A tool for generating consensus long-read assemblies for bacterial genomes

  Language:Python30528

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k332

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C769166

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python939175

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k577

• nanoporetech/medaka

  Sequence correction provided by ONT Research

  Language:Python41074

• lbcb-sci/racon

  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

  Language:C++19934

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala34060

• rrwick/Unicycler

  hybrid assembly pipeline for bacterial genomes

  Language:C++553131