Cimorgh-IT
Cimorgh is a bioinformatics and healthcare data analysis company which offers different services ranges from clinical NGS data analysis software such as GeneAp.
Cimorgh Medical IT solutionsTehran
Pinned Repositories
absplice
ACID
Affordable Cancer Interception and Diagnostics
AutoGVP
civicpy
A python interface for the CIViC db application
cromshell
CLI for interacting with Cromwell servers
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
gatk
Official code repository for GATK versions 4 and up
genomic-FM
Genomics_workflow
MobidicWDL workflows
GnomAD_preprocess
preprocess gnomAD vcf files for GENAP
Cimorgh-IT's Repositories
Cimorgh-IT/absplice
Cimorgh-IT/ACID
Affordable Cancer Interception and Diagnostics
Cimorgh-IT/AutoGVP
Cimorgh-IT/civicpy
A python interface for the CIViC db application
Cimorgh-IT/cromshell
CLI for interacting with Cromwell servers
Cimorgh-IT/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Cimorgh-IT/gatk
Official code repository for GATK versions 4 and up
Cimorgh-IT/genomic-FM
Cimorgh-IT/Genomics_workflow
MobidicWDL workflows
Cimorgh-IT/GnomAD_preprocess
preprocess gnomAD vcf files for GENAP
Cimorgh-IT/kit_design
Cimorgh-IT/long-read-pipelines
Long read production pipelines
Cimorgh-IT/MDUtils
Utilities for MobiDetails
Cimorgh-IT/MobiDetails
WebApp for DNA variants interpretation
Cimorgh-IT/Nirvana_source18
The nimble & robust variant annotator
Cimorgh-IT/Pangolin
Pangolin is a deep-learning method for predicting splice site strengths.
Cimorgh-IT/parabricks-wdl
Accelerated genomics workflows in the Workflow Description Language
Cimorgh-IT/gtc2vcf
Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
Cimorgh-IT/InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
Cimorgh-IT/pb-StarPhase
A phase-aware pharmacogenomic diplotyper for PacBio datasets
Cimorgh-IT/PhenoGPT
Cimorgh-IT/pumbaa
Command-line interface for Cromwell server
Cimorgh-IT/rest_variantValidator
REST Interface for VariantValidator. Includes docker container
Cimorgh-IT/RNA-seq
A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
Cimorgh-IT/sambamba
Tools for working with SAM/BAM data
Cimorgh-IT/Spring
FASTQ compression
Cimorgh-IT/VariPred
This is the repository for the variant impact predictor VarIpred.
Cimorgh-IT/vcf_tools
vcf_manage
Cimorgh-IT/VCFshiny
shiny app to visualize vcf and annovar file
Cimorgh-IT/warp
WDL Analysis Research Pipelines