Pinned Repositories
bifrost
Template building and multi-modal registration
brainsss
Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)
fictrac
A webcam-based method for tracking spherical motion and generating fictive animal paths.
flystim
Visual stimulus generator for neuroscience experiments
labpack
Lab-specific stimuli, config, and resources to be used with stimpack
neurite
Neural networks toolbox focused on medical image analysis
pasna-acr-currbio2021
Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.
sleep-analysis
Library for analyzing Drosophila Activity Monitor data
stimpack
Precise and flexible generation of stimuli for neuroscience experiments.
visanalysis
Analysis environment for visprotocol imaging experiments
ClandininLab's Repositories
ClandininLab/stimpack
Precise and flexible generation of stimuli for neuroscience experiments.
ClandininLab/brainsss
Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)
ClandininLab/flystim
Visual stimulus generator for neuroscience experiments
ClandininLab/bifrost
Template building and multi-modal registration
ClandininLab/visanalysis
Analysis environment for visprotocol imaging experiments
ClandininLab/fictrac
A webcam-based method for tracking spherical motion and generating fictive animal paths.
ClandininLab/labpack
Lab-specific stimuli, config, and resources to be used with stimpack
ClandininLab/pasna-acr-currbio2021
Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.
ClandininLab/sleep-analysis
Library for analyzing Drosophila Activity Monitor data
ClandininLab/2pstim
Custom-written code for visual stimulus presentation (Clark et al. 2011)
ClandininLab/brainsss2
refactor of the brainsss repo for 2-photon imaging analysis
ClandininLab/brukerbridge
ClandininLab/containers
Commonly used containers and scripts to build them
ClandininLab/dataflow
ClandininLab/goal-driven-ANNs
ClandininLab/L1L2-deblur
ClandininLab/lightcrafter
ClandininLab/modules
Custom `lmod` modules for use on Sherlock
ClandininLab/neurite
Neural networks toolbox focused on medical image analysis
ClandininLab/pystrum
A general library of python tools
ClandininLab/visprotocol
Visual stimulation protocol and metadata handler for flystim experiments
ClandininLab/ANTsPy
Advanced Normalization Tools in Python
ClandininLab/brezovec_volition_2023
ClandininLab/flyrpc
Library for managing server/client interactions
ClandininLab/flyvr
ClandininLab/ipp-tools
Collection of IPyParallel tools and helper scripts
ClandininLab/multisensory-freezing
python scripts for the ball rig with auditory and visual stimuli
ClandininLab/multistim
server/client and gui for presenting audio and visual stimuli to fruit flies
ClandininLab/pijm
PIJM is just matplotlib
ClandininLab/voxelmorph
Unsupervised Learning for Image Registration