ClandininLab

Pinned Repositories

bifrost
Template building and multi-modal registration
Language:Python31
brainsss
Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)
Language:Jupyter Notebook5 10 34
fictrac
A webcam-based method for tracking spherical motion and generating fictive animal paths.
Language:C++1 2 00
flystim
Visual stimulus generator for neuroscience experiments
Language:Python4 6 82
labpack
Lab-specific stimuli, config, and resources to be used with stimpack
Language:Python1 10 11
neurite
Neural networks toolbox focused on medical image analysis
Language:Python00
pasna-acr-currbio2021
Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.
Language:Python1 8 00
sleep-analysis
Library for analyzing Drosophila Activity Monitor data
Language:Jupyter Notebook1 8 00
stimpack
Precise and flexible generation of stimuli for neuroscience experiments.
Language:Python7 8 72
visanalysis
Analysis environment for visprotocol imaging experiments
Language:Python2 3 21

ClandininLab's Repositories

ClandininLab/stimpack
Precise and flexible generation of stimuli for neuroscience experiments.
Language:Python7 8 72
ClandininLab/brainsss
Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)
Language:Jupyter Notebook5 10 34
ClandininLab/flystim
Visual stimulus generator for neuroscience experiments
Language:Python4 6 82
ClandininLab/bifrost
Template building and multi-modal registration
Language:Python31
ClandininLab/visanalysis
Analysis environment for visprotocol imaging experiments
Language:Python2 3 21
ClandininLab/fictrac
A webcam-based method for tracking spherical motion and generating fictive animal paths.
Language:C++1 2 00
ClandininLab/labpack
Lab-specific stimuli, config, and resources to be used with stimpack
Language:Python1 10 11
ClandininLab/pasna-acr-currbio2021
Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.
Language:Python1 8 00
ClandininLab/sleep-analysis
Library for analyzing Drosophila Activity Monitor data
Language:Jupyter Notebook1 8 00
ClandininLab/2pstim
Custom-written code for visual stimulus presentation (Clark et al. 2011)
Language:C++0 3 00
ClandininLab/brainsss2
refactor of the brainsss repo for 2-photon imaging analysis
Language:Jupyter Notebook0 8 260
ClandininLab/brukerbridge
Language:Python0 10 31
ClandininLab/containers
Commonly used containers and scripts to build them
Language:Makefile0 8 00
ClandininLab/dataflow
Language:Jupyter Notebook0 1 00
ClandininLab/goal-driven-ANNs
Language:Jupyter Notebook0 8 00
ClandininLab/L1L2-deblur
Language:MATLAB00
ClandininLab/lightcrafter
Language:Python0 1 00
ClandininLab/modules
Custom `lmod` modules for use on Sherlock
Language:Lua0 8 00
ClandininLab/neurite
Neural networks toolbox focused on medical image analysis
Language:Python00
ClandininLab/pystrum
A general library of python tools
Language:Python0 0 00
ClandininLab/visprotocol
Visual stimulation protocol and metadata handler for flystim experiments
Language:Python0 2 60
ClandininLab/ANTsPy
Advanced Normalization Tools in Python
Language:Python1 0
ClandininLab/brezovec_volition_2023
Language:Python
ClandininLab/flyrpc
Library for managing server/client interactions
Language:Python4 0
ClandininLab/flyvr
Language:Python1 0
ClandininLab/ipp-tools
Collection of IPyParallel tools and helper scripts
Language:Python1 0
ClandininLab/multisensory-freezing
python scripts for the ball rig with auditory and visual stimuli
Language:Python9 0
ClandininLab/multistim
server/client and gui for presenting audio and visual stimuli to fruit flies
Language:Python9 0
ClandininLab/pijm
PIJM is just matplotlib
Language:Python
ClandininLab/voxelmorph
Unsupervised Learning for Image Registration
Language:Python