ClearAnatomics/ClearMap

Issues

• Using custom atlas in ClearMap GUI

  #154 opened 6 days ago
  0

• [NEW_FEATURE] Allow faster graph loading when edge geometry is not needed

  #152 opened a month ago
  0

• [BUG] IO: Unable to read TIF file that was written by ClearMap (custom script)

  #151 opened a month ago
  1

• Confusing stitch progress bar

  #150 opened 3 months ago
  0

• tuple index of range (resampling autofluorescence step)

  #149 opened 3 months ago
  0

• Subclasses should implement this method

  #148 opened 4 months ago
  0

• Z dimension not detected for preview rigid stitching

  #147 opened 4 months ago
  1

• ClearMap GUI missing "Run detection" button

  #146 opened 4 months ago
  1

• cannot import name 'Texture3D' from 'vispy.visuals.volume'

  #145 opened 5 months ago
  3

• No module named 'graph_tool'

  #144 opened 6 months ago
  1

• modular implementations?

  #142 opened 7 months ago
  0

• missing ClearMap.Alignment.orientation module in branch vasculature_analysis

  #141 opened 8 months ago
  2

• Elastix Error During Registration

  #140 opened 9 months ago
  0

• Skipping Atlas Registration in TubeMap

  #139 opened 9 months ago
  1

• Transform points error

  #138 opened 9 months ago
  0

• Stitching Issues

  #137 opened 9 months ago
  1

• Traceback error when loading UI

  #136 opened 9 months ago
  0

• Missing of wobbly_stitcher_rigid.jpg in folder: /ClearMap/gui/creator/graphics_resources/graphics_resources/

  #135 opened 10 months ago
  0

• Inverse transformation to transform brain images onto atlas space

  #134 opened 10 months ago
  1

• Wobbly Stitcher crashing

  #133 opened a year ago
  4

• matplot not available from current channel found while installation

  #132 opened a year ago
  1

• Some problems about Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature

  #131 opened a year ago
  1

• conda error while installation

  #130 opened a year ago
  5

• .sh install meet some error

  #129 opened a year ago
  7

• cannot compile ClearMap modules

  #128 opened a year ago
  8

• Example dataset for CellMap and TubeMap

  #127 opened a year ago
  5

• Numpy import issues with `ClearMap.compile`

  #126 opened a year ago
  1

• Export ID numbers for ClearMap2.1?

  #124 opened a year ago
  1

• GUI: Alignment Issue

  #123 opened 2 years ago
  4

• Pytorch version not available anymore

  #122 opened 2 years ago
  7

• import ClearMap.Compile fails

  #121 opened 2 years ago
  1

• Compiler issues

  #120 opened 2 years ago
  0

• Question about the unit of vasculature radius

  #119 opened 2 years ago
  1

• Resampling IndexError: tuple index out of range

  #118 opened 9 months ago
  4

• Problem Plotting 3d Mesh

  #117 opened 2 years ago
  2

• Adding CCFv3 annotation requires updating the "No label" values

  #116 opened 2 years ago
  0

• Annotated_counts table counts area and their subdivision differently

  #115 opened 2 years ago
  1

• clearmap results ID different than Allen Region ID

  #114 opened 2 years ago
  1

• Cell Annotation Didn't Work...

  #113 opened 2 years ago
  2

• registration troubleshooting

  #111 opened 3 years ago
  0

• Bug: inverse transform

  #110 opened 2 years ago
  1

• TypeError: key must be an int, slice, or sequence

  #109 opened a year ago
  5

• Spyder 5.2.2 incompatible to Anaconda 3

  #108 opened 3 years ago
  1

• TubeMap Create a test data

  #107 opened 3 years ago
  0

• Stitching parameters for persistent duplications

  #106 opened 3 years ago
  0

• TubeMap: "IndexError: list index out of range" while runnin the cell of Rigid z-alignment

  #105 opened 3 years ago
  1

• Alignment of warped atlas to autofluorescence looks correct but overlay of raw atlas with transformed cells appears wrong.

  #104 opened 3 years ago
  1

• How to generate intensity profile?

  #103 opened 3 years ago
  2

• Cannot find name for type 'elastix_resampled_to_auto'!

  #102 opened 3 years ago
  3

• Cell alignment section - file not found error

  #101 opened 3 years ago
  1