Replace DeliverAPI with DeliveryAPI

[ivadym]

As a bioinformatician,
I want a maintainable and unambiguous delivery API,
So that the delivery to Caesar is more understandable and error-free.

Some work has already been done:

cg/cg/meta/delivery/delivery.py

Line 22 in ff34ed9

class DeliveryAPI:

Acceptance Criteria

• Files delivered successfully to Caesar
• Removed unnecessary logic from certain deliveries (FastQ, Fastq-QC, etc.)

Notes

• Related user stories. Some should be addressed, ideally, taking into account the new delivery API:
  • #3432
  • #2603
  • #3339
  • #2304

Implementation plan

• Extract the files to be delivered per workflow and delivery type: #3029
• Report the delivered files in the delivery report: #3029
• Add commands for the updated delivery API
• Implement Rsync to Caesar following new file centered delivery logic
• Replace the DeliverAPI with the DeliveryAPI in the clinical uploads

[ChrOertlin]

closing in favour of: #3627