Clinical-Genomics/cg

Issues

• Linking 'Customer' and 'User' Tabs for Better Navigation

  #3882 opened 2 months ago by mariarevenikioti
  0

• Update of RML order form to include two new sets of index

  #3869 opened 2 months ago by AnnaZetterlund
  0

• Bug: Don't add empty "Undetermined" fastq files to housekeeper

  #3874 opened 2 months ago by karlnyr
  1

• Bug: uploaded at set in wrong places.

  #3842 opened 2 months ago by ChrOertlin
  2

• Add validation preventing ordering mip cases with samples as "unknown"

  #3821 opened 3 months ago by beatrizsavinhas
  7

• Validating Sample Sex in cg add relationship Command

  #3714 opened 3 months ago by karlnyr
  5

• Bug: Unable to Submit Microbial Order on Stage

  #3862 opened 2 months ago by moedarrah
  3

• Create service to upload completed mutant analyses to caesar

  #3659 opened 4 months ago by beatrizsavinhas
  5

• Add information of what cases are being delivered in the delivery message for analysis files deliveries

  #3846 opened 2 months ago by karlnyr
  2

• Same file archived to PDC the same day cannot be destinguished

  #3843 opened 2 months ago by Vince-janv
  1

• Changing start of microSALT analyses depending on priority

  #3831 opened 2 months ago by karlnyr
  0

• Increase the slurm job priority of decompression jobs on Hasta

  #3804 opened 2 months ago by Karl-Svard
  1

• Bug: deliver files service unable to deliver case has no files

  #3712 opened 2 months ago by karlnyr
  4

• Bug: Freshdesk tickets may match SuSy ticket ids

  #3702 opened 2 months ago by islean
  1

• Set up cascading properties of polymorphic tables

  #3805 opened 2 months ago by islean
  0

• Bug: post processing runs into a sql integrity error

  #3835 opened 2 months ago by ChrOertlin
  8

• Update scout load config with d4_file keys

  #3837 opened 2 months ago by northwestwitch
  0

• Bug: Not possible to generate delivery reports for external RNA samples

  #3834 opened 2 months ago by beatrizsavinhas
  0

• [User story]: Internal Control cases should have higher priority than priority cases

  #3768 opened 2 months ago by karlnyr
  5

• Add HiFi Yield column to PacBio Sample Sequencing Metrics

  #3825 opened 2 months ago by fellen31
  1

• Bug: using deprecated pydantic functionality

  #3827 opened 2 months ago by ChrOertlin
  0

• Choose data-delivery sample-wise for an order

  #3806 opened 3 months ago by eliottBo
  1

• Create orderform for microbial sequencing - raw data delivery

  #3767 opened 3 months ago by karlnyr
  1

• Rename nextflow config file

  #3819 opened 3 months ago by jemten
  0

• Catch Errors and continue in clean FASTQ command

  #3817 opened 3 months ago by Vince-janv
  0

• Increase transparancy of order logic in deliveries to clinical delivery

  #3785 opened 3 months ago by karlnyr
  1

• Bug: Empty fastq files are added to housekeeper for negative controls

  #3798 opened 3 months ago by karlnyr
  0

• Automatically tagging tickets with re-runs when opening freshdesk ticket

  #3750 opened 3 months ago by EmiliaRegazzoni
  4

• [Feature request] MIP-RNA JSON orderform support

  #3780 opened 3 months ago by islean
  1

• Refactor Rsync API

  #3693 opened 3 months ago by ChrOertlin
  1

• Make cg help searchable

  #3670 opened 4 months ago by seallard
  2

• Add CHILDHYPOTONIA to the clinical masterlist

  #3788 opened 3 months ago by karlnyr
  0

• Bug: raredisease delivery fails due to sample pairs in sample name list

  #3781 opened 3 months ago by peterpru
  2

• Bug: raw-data cases cannot be delivered

  #3790 opened 3 months ago by Vince-janv
  0

• Incorporate panel generation in rd start command

  #3753 opened 3 months ago by jemten
  1

• Bug: cg workflow raredisease panel error

  #3770 opened 3 months ago by peterpru
  4

• Bug: Copied delivery link in TB does not correspond caesar file structure

  #3728 opened 3 months ago by eliottBo
  1

• Refactor CRUD function cases_to_analyse

  #3698 opened 3 months ago by diitaz93
  1

• Pass order prio or express status to scout on load

  #3765 opened 3 months ago by dnil
  2

• (Improve order flow) Add validation rule for volume being required for containerised samples

  #3722 opened 3 months ago by islean
  4

• (Improve order flow) Add validation for required container names for containerised samples

  #3723 opened 3 months ago by islean
  5

• Automatic delivery message for uploaded analyses

  #3730 opened 3 months ago by karlnyr
  2

• Bug: Delivery of cases where case.name is the same as the sample.name

  #3745 opened 3 months ago by karlnyr
  5

• bug in delivery logic

  #3740 opened 3 months ago by ChrOertlin
  0

• Delivery file tags restructuring

  #3729 opened 3 months ago by ChrOertlin
  0

• Bug: Empty `Uploaded` Field For Uploaded Cases In Trailblazer.

  #3718 opened 3 months ago by RasmusBurge-CG
  1

• Validating Sample Sex in cg add relationship Command

  #3709 opened 3 months ago by RasmusBurge-CG
  1

• Bug: Orders connected to SuSy tickets are not placeable

  #3711 opened 3 months ago by islean
  1

• Calculation for sample reads does not account for low q30 score

  #3679 opened 4 months ago by beatrizsavinhas
  1

• Bug: Fetching sequencing runs break

  #3660 opened 4 months ago by islean
  0