Clinical-Genomics/cg

Increase the slurm job priority of decompression jobs on Hasta

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As a prod bioinfo member or customer,
I want spring decompression jobs to run with higher priority,
So that high prio re-runs aren't bottlenecked by a queue system bogged down by development jobs.

Work impact

Answer the following questions:

  • Is there currently a workaround for this issue? If so, what is it?
    • Manually upping the QOS of slurm jobs (NOTE: there are a minimum of 8(!) jobs per sample)
  • How much time would be saved by implementing this feature on a weekly basis?
    • 0.5 to 1h of manual work. But we'll save up to DAYS of turn around time for deliveries.
  • How many users are affected by this issue?
    • All customers ordering re-runs. All users working in prod.
  • Are customers affected by this issue?
    • Yes. All re-runs are affected by this.

Acceptance Criteria

  • The default QOS of spring decompression jobs on Hasta is changed from low -> high

Notes

  • Additional information.
  • Dependencies.
  • Related user stories.

Technical refinement

  • Make spring-fastq QOS = high