Clinical-Genomics/cg

Issues

• Create service mutant-store-available

  #3658 opened 4 months ago
  1

• Add mutant order validation rules

  #3657 opened 4 months ago
  0

• Update contact person for invoicing workflow

  #3655 opened 3 months ago
  5

• Delivery on sample level of fastq files to Caesar

  #3651 opened 2 months ago
  2

• Delivery report - add standard sentence for when QC metrics has failed.

  #3650 opened 4 months ago
  0

• (Improve order flow)Add existing sample/case models and separate flows

  #3649 opened 4 months ago
  1

• Rename managed_variants file to critical variants?

  #3646 opened 4 months ago
  2

• Bug: Application Versions with malformed `updated_at`

  #3643 opened 3 months ago
  5

• Bug: Tickets are submitted despite incorrect case names

  #3642 opened 4 months ago
  1

• Bug: Tumour samples are not read as such in the order portal

  #3636 opened 4 months ago
  0

• Bug: Ordered_at dates are not updated

  #3628 opened 4 months ago
  0

• Re-write delivery api

  #3627 opened 3 months ago
  1

• Add backend validation for mip-dna orders

  #3614 opened 4 months ago
  0

• Bug: Housekeeper

  #3607 opened 4 months ago
  1

• Add backend validation for microsalt orders

  #3593 opened 4 months ago
  0

• Further improve order submitters

  #3592 opened 2 months ago
  1

• Cancel actions creates orders without cases

  #3590 opened 4 months ago
  3

• Generate samplesheets for raredisease with both lane number and flowcell

  #3565 opened 3 months ago
  2

• Bug: No delivery option not parsed correctly.

  #3563 opened 4 months ago
  0

• Bug: Cannot post-process sequencing runs due to flawed logic

  #3555 opened 4 months ago
  0

• Prevent analyses from starting for cases where negative controls received a lot of reads

  #3537 opened 2 months ago
  1

• Bug: CLI command rna-to-scout not checking if case is an RNA case

  #3536 opened 4 months ago
  0

• Add information on internal negative control for a given sample

  #3535 opened a month ago
  6

• Add CLI to create validation cases

  #3533 opened 12 days ago
  3

• Bug: Error when submitting a microbial order

  #3520 opened 5 months ago
  6

• No tests for order endpoints

  #3512 opened 4 months ago
  1

• Cases without samples crash the order list view

  #3479 opened 5 months ago
  1

• Bug: Raredisease workflow not storing Clinical STRs variants file

  #3471 opened 5 months ago
  1

• Bug: Raredisease not storing d4 coverage file

  #3470 opened 4 months ago
  1

• Change is_delivered in Order table

  #3463 opened 5 months ago
  3

• Bug: Not possible to filter for `Pending` status in Balsamic tab of the Order view

  #3456 opened 5 months ago
  3

• Improve design for tracking status of samples, cases and analyses

  #3452 opened 2 months ago
  2

• Requests against /orders fails for specific pages

  #3448 opened 5 months ago
  4

• Hide aggregated sequencing qc column in status db

  #3440 opened 5 months ago
  0

• List finished analyses in the delivery message for data_delivery="analysis"

  #3439 opened 2 months ago
  1

• Replace DeliverAPI with DeliveryAPI

  #3433 opened 4 months ago
  1

• The removal of the `--force-all` flag from the DeliveryAPI logic and cli calls

  #3432 opened 3 months ago
  1

• Update invoicing logic to finance GMCK (Draft)

  #3430 opened 2 months ago
  1

• Add price information to the sample table in cg

  #3417 opened 4 months ago
  5

• Remove UMI options from Balsamic API

  #3416 opened 5 months ago
  0

• Handling of session commits in the CRUD

  #3414 opened 6 months ago
  0

• Add `--msi-pon` option to cg workflow balsamic

  #3407 opened 6 months ago
  0

• Sample sheets for single-sample lanes failing validation

  #3404 opened 3 months ago
  4

• Show cases in order summary

  #3396 opened 2 months ago
  1

• Add a new field "Platform" to Application in statusdb

  #3395 opened 2 months ago
  15

• Alert the user of unstarted analysis due to `has too few reads`

  #3392 opened 6 months ago
  5

• test issue

  #3385 opened 6 months ago
  0

• Tomte delivered results contain ACC number instead of family number

  #3368 opened 2 months ago
  14

• Updates to the text in the delivery report

  #3363 opened 6 months ago
  2

• Harmonise microSALT delivery options

  #3339 opened 6 months ago
  0