Clinical-Genomics/genotype-api

Issues

• Multiple tests are skipped for Async operations

  #155 opened 2 months ago by henrikstranneheim
  2

• Genotype pending database transactions cause the webui to crash

  #148 opened 2 months ago by seallard
  20

• AttributeError: 'NoneType' object has no attribute 'genotypes' in get_matches

  #151 opened 3 months ago by ahdamin
  0

• App stops and failed connection validation

  #140 opened 6 months ago by ChrOertlin
  1

• bug( sql session runs stale and drops)

  #138 opened 8 months ago by ChrOertlin
  0

• add tests for endpoint services

  #136 opened 8 months ago by ChrOertlin
  0

• Genotype shows failed snps on the web interface

  #134 opened 9 months ago by moahaegglund
  2

• Refactor SQL filter statements

  #88 opened 9 months ago by henrikstranneheim
  0

• Add pytest and coverage action

  #97 opened 9 months ago by henrikstranneheim
  0

• Refactor Pydantic models under validation namespace

  #94 opened 10 months ago by henrikstranneheim
  1

• refactor SQL queries to use store filters

  #129 opened 9 months ago by ChrOertlin
  0

• Use poetry

  #83 opened 9 months ago by henrikstranneheim
  0

• Update Pydantic to version 2

  #84 opened 9 months ago by henrikstranneheim
  0

• Add better error handling

  #124 opened 9 months ago by ChrOertlin
  0

• Type hints in end points

  #123 opened 9 months ago by ChrOertlin
  0

• Add logging

  #122 opened 9 months ago by ChrOertlin
  0

• Allow support for samples with multiple SNP allele variants

  #120 opened 2 years ago by ChrOertlin
  0

• Plate status counts not displaying correctly

  #116 opened 9 months ago by ChrOertlin
  0

• User is missing when signing off a plate

  #110 opened 9 months ago by beatrizsavinhas
  2

• Refactor to proper CRUD

  #90 opened 9 months ago by henrikstranneheim
  0

• Refactor to pep 604

  #86 opened 9 months ago by henrikstranneheim
  0

• Refactor to pep 0585

  #85 opened 9 months ago by henrikstranneheim
  0

• Refactor SQL models under store namespace

  #93 opened 9 months ago by henrikstranneheim
  0

• Refactor CRUD under store namespace

  #91 opened 9 months ago by henrikstranneheim
  2

• Update to Python 3.11

  #89 opened 10 months ago by henrikstranneheim
  0

• Use RHEL base image

  #92 opened 10 months ago by henrikstranneheim
  0

• Refactor to StrEnum 0663

  #87 opened 10 months ago by henrikstranneheim
  0

• Add support for functionality present in CLI

  #75 opened 2 years ago by islean
  0

• Duplicate samples returned from getSamples

  #70 opened 2 years ago by elevu
  0

• GET samples endpoint with both plate_id and incomplete=true parameters is returning 500

  #68 opened 2 years ago by elevu
  0

• Sex_check failing when sex is unknown

  #65 opened 2 years ago by Vince-janv
  3

• Dates on match page not working properly

  #63 opened 3 years ago by Vince-janv
  1

• Feedback on Genotype

  #51 opened 3 years ago by moahaegglund
  3

• Chnage sample detail structure

  #59 opened 3 years ago by Mropat
  1

• Return plate stats in plates view

  #57 opened 3 years ago by Mropat
  0

• Doesn't work to upload new results

  #53 opened 3 years ago by moahaegglund
  3

• Add admin/non admin permissions

  #52 opened 3 years ago by elevu
  0

• Move genotype plot from vogue to tgenotype-api

  #13 opened 3 years ago by mayabrandi
  2

• Add filter and update models to read sample and update sample

  #9 opened 3 years ago by mayabrandi
  0

• Getting random 500 on genotype

  #22 opened 3 years ago by elevu
  3

• Sex set to null when changing it with a Patch

  #23 opened 3 years ago by elevu
  1

• Add new feature: run check on all samples automatically when added to database

  #12 opened 3 years ago by mayabrandi
  1

• When adding new user that already exists, backend should return 409

  #31 opened 3 years ago by elevu
  1

• When checking a sample that is not checked before got 500 response

  #32 opened 3 years ago by moedarrah
  1

• Internal Server Error when upload a file

  #25 opened 3 years ago by moedarrah
  0

• Add signed_by to Sign off plate endpoint

  #24 opened 3 years ago by moedarrah
  0

• Enable Google Login

  #11 opened 3 years ago by mayabrandi
  0

• Getting /500 on https://genotype-stage.scilifelab.se/docs#/plates/upload_plate_plates_plate_post

  #15 opened 3 years ago by elevu
  0

• Unable to upload a snps

  #19 opened 3 years ago by moedarrah
  3

• CORS issues when calling endpoints from the browser

  #14 opened 3 years ago by elevu
  0