Autogenerated - do not edit manually!
Run writeREADME.sh to update this README.md.
This repository contains Dockerfiles for Rivanna.
. ├── app1 │ ├── version1 │ │ ├── Dockerfile │ │ └── README.md │ └── version2 │ ├── Dockerfile │ └── README.md ├── app2 │ └── version1 │ ├── Dockerfile │ └── README.md ├── README.md # Do not edit this file! └── writeREADME.sh
Each version should reside in its own directory with a README.md. Here is a suggested template:
<name of main app> <version> <any other important info>
<homepage of main app>
<any other apps/packages>
Usage on Rivanna:
```
module load singularity
singularity pull docker://uvarc/<app>:<tag>
./<app>_<tag>.sif
```
Individual README.md files are used as the Docker Hub repository overview.
To contribute, please visit the wiki for instructions and tips.
| App | Version | Base Image | Compressed Size | Last Updated (UTC) | By |
|---|---|---|---|---|---|
| alphafold | 2.0.0 | nvidia/cuda:${CUDA}-base |
3.149 GB | 2021-07-21 20:14:32.479255 | rsdmse |
| 2.0.1 | nvidia/cuda:${CUDA}-base |
2.929 GB | 2021-09-30 11:44:11.233821 | rsdmse |
|
| 2.1.1 | debian:bullseye-slim |
2.140 GB | 2021-11-11 22:50:20.397639 | rsdmse |
|
| 2.1.2 | debian:bullseye-slim |
2.707 GB | 2022-01-28 14:49:28.987478 | rsdmse |
|
| amptorch | 0.1 | debian:buster-slim |
2.330 GB | 2021-09-20 15:37:47.255919 | rsdmse |
| 20201028-al | debian:buster-slim |
1.400 GB | 2021-10-08 12:14:43.908139 | rsdmse |
|
| 20210308 | debian:buster-slim |
1.795 GB | 2021-06-22 13:57:33.307414 | rsdmse |
|
| bart-mri | 0.7.00 | scratch |
18.544 MB | 2021-03-05 20:10:32.291212 | rsdmse |
| cc3d | 4.2.5 | ubuntu:20.04 |
638.032 MB | 2021-09-01 12:46:06.083639 | rsdmse |
| cellassign | 0.99.2 | rocker/ml:4.0.5-cuda11.1 |
5.482 GB | 2022-03-02 12:47:00.141838 | rsdmse |
| cellprofiler | 3.1.9 | openjdk:8-jdk-slim |
584.534 MB | 2020-05-29 14:39:25.659657 | rsdmse |
| 4.0.1 | ubuntu:20.04 |
712.173 MB | 2020-09-09 11:29:11.872026 | rsdmse |
|
| cnnpeaks | 200913 | python:3.7.9-slim-buster |
1.390 GB | 2020-10-15 18:10:46.459076 | rsdmse |
| comm4522 | sp22 | python:3.9-slim-bullseye |
2.708 GB | 2022-02-08 15:07:05.869843 | rsdmse |
| danpos | 3.1.1 | python:3.7.6-slim-buster |
208.754 MB | 2020-08-09 19:50:06.950131 | rsdmse |
| deeplabcut | 2.2 | debian:buster-slim |
4.963 GB | 2021-08-11 13:14:43.974651 | rsdmse |
| dragonn | 0.4.1 | python:3.7.9-slim-buster |
1.244 GB | 2020-12-21 18:26:49.371628 | rsdmse |
| ds5110 | spark3.0 | continuumio/miniconda3:4.9.2 |
`` | ||
| spark3.1 | continuumio/miniconda3:4.9.2 |
1.736 GB | 2021-08-12 11:37:53.212935 | rsdmse |
|
| ds5559 | spark2 | jupyter/pyspark-notebook:dc9744740e12 |
1.991 GB | 2020-10-21 14:24:18.743139 | rsdmse |
| spark3 | jupyter/pyspark-notebook:4a112c0f11eb |
1.358 GB | 2020-10-06 22:10:32.189093 | rsdmse |
|
| dvipng | 1.17 | gcr.io/distroless/cc-debian10 |
13.623 MB | 2020-09-06 12:18:13.402213 | rsdmse |
| funannotate | 1.8.3 | debian:buster-slim |
1.189 GB | 2021-02-24 15:48:50.829226 | rsdmse |
| hydrator | 0.0.10 | node:14.3.0-slim |
178.938 MB | 2020-07-08 13:35:17.546402 | rsdmse |
| inkscape | 0.92.4 | alpine:3.11.6 |
35.476 MB | 2020-05-28 11:40:21.37022 | rsdmse |
| 1.0 | alpine:3.12.0 |
77.034 MB | 2020-08-10 00:59:26.5463 | rsdmse |
|
| lightgbm | 2.3.1 | nvidia/opencl:runtime |
104.777 MB | 2020-08-09 11:13:10.858526 | rsdmse |
| 3.0.0 | gcr.io/distroless/cc-debian10 |
14.916 MB | 2020-09-02 12:04:59.336756 | rsdmse |
|
| maestro | 1.3.0 | continuumio/miniconda3:4.9.2 |
1.799 GB | 2021-01-06 15:21:04.241953 | rsdmse |
| minkowskiengine | 0.5.4 | debian:buster-slim |
1.690 GB | 2021-06-16 19:14:41.116219 | rsdmse |
| mujoco-py | 2.1.2.14 | python:3.8-slim-buster |
1.468 GB | 2021-12-01 18:48:58.142802 | rsdmse |
| muview2 | 2.2a2 | ubuntu:18.04 |
114.333 MB | 2020-10-28 13:28:46.721377 | rsdmse |
| nanopolish | 0.13.2 | gcr.io/distroless/python3-debian10 |
142.970 MB | 2020-10-07 19:21:34.741678 | rsdmse |
| ocp-models | 0.0.3 | debian:bullseye-slim |
2.880 GB | 2022-03-01 13:05:18.650288 | rsdmse |
| omero-client | 5.6.1 | continuumio/miniconda3:4.8.2 |
1.375 GB | 2020-07-09 13:35:20.84667 | rsdmse |
| open3d | 0.15.2 | uvarc/tensorflow:2.8.0 |
2.982 GB | 2022-03-04 22:50:56.679177 | rsdmse |
| openmm | 7.5.0 | scratch |
451.169 MB | 2021-02-24 23:33:29.288453 | rsdmse |
| patric | 1.027 | centos:8.1.1911 |
115.069 MB | 2020-06-02 10:53:43.716121 | rsdmse |
| 1.031 | debian:buster-slim |
65.926 MB | 2020-08-10 00:49:27.812868 | rsdmse |
|
| ps2eps | 1.68 | debian:buster-slim |
54.597 MB | 2020-10-05 21:20:09.556291 | rsdmse |
| pytorch | 1.10.0 | python:3.8-slim-buster |
2.229 GB | 2021-11-28 14:49:18.10689 | rsdmse |
| 1.4.0-py37 | python:3.7.4-slim-buster |
1.007 GB | 2021-04-19 13:41:46.716233 | rsdmse |
|
| 1.5.0 | pytorch/pytorch:1.5-cuda10.1-cudnn7-runtime |
1.849 GB | 2020-06-09 01:13:13.500138 | rsdmse |
|
| 1.5.1 | pytorch/pytorch:1.5.1-cuda10.1-cudnn7-runtime |
2.057 GB | 2021-04-19 17:55:40.205335 | rsdmse |
|
| 1.6.0 | pytorch/pytorch:1.6.0-cuda10.1-cudnn7-runtime |
2.270 GB | 2020-08-25 21:33:21.645904 | rsdmse |
|
| 1.7.0 | gcr.io/distroless/python3-debian10 |
1.337 GB | 2020-10-29 19:25:19.370825 | rsdmse |
|
| 1.8.0 | gcr.io/distroless/python3-debian10 |
1.150 GB | 2021-03-04 22:40:55.054253 | rsdmse |
|
| 1.8.1 | python:3.8.8-slim-buster |
2.364 GB | 2021-12-06 21:13:22.80343 | rsdmse |
|
| qiime2 | 2020.6 | continuumio/miniconda3:4.8.2 |
1.325 GB | 2020-07-04 16:53:29.891717 | rsdmse |
| 2020.8 | debian:buster-slim |
935.868 MB | 2020-11-11 14:54:02.517266 | rsdmse |
|
| rapidsai | 0.17 | debian:buster-slim |
3.509 GB | 2021-02-05 13:10:11.392025 | rsdmse |
| 0.19 | debian:buster-slim |
3.802 GB | 2021-04-29 01:27:24.709666 | rsdmse |
|
| 21.10 | debian:buster-slim |
3.058 GB | 2021-10-08 13:40:24.735341 | rsdmse |
|
| rmats-turbo | 4.1.1 | debian:bullseye-slim |
364.886 MB | 2021-09-28 22:24:38.185023 | rsdmse |
| sga | 0.10.15 | python:3.7-slim-buster |
98.080 MB | 2021-11-17 18:19:14.471765 | rsdmse |
| sgp | pytorch-1.0 | python:3.6.14-slim-buster |
644.856 MB | 2021-08-04 17:59:04.286627 | rsdmse |
| skopeo | 1.1.0 | frolvlad/alpine-glibc |
21.101 MB | 2020-07-04 14:50:16.656518 | rsdmse |
| 1.1.1 | gcr.io/distroless/static-debian10 |
13.384 MB | 2020-08-21 14:27:12.698304 | rsdmse |
|
| smcpp | 1.15.4 | python:3.7.9-slim-buster |
158.007 MB | 2020-11-05 21:26:25.727266 | rsdmse |
| subversion | 1.14.0 | ubuntu:20.10 |
39.418 MB | 2020-10-13 09:52:00.263967 | rsdmse |
| sumo | 1.4.0 | debian:bullseye-slim |
176.588 MB | 2020-05-29 17:49:29.088243 | rsdmse |
| 1.6.0 | gcr.io/distroless/cc-debian10 |
85.778 MB | 2020-08-20 19:26:13.520411 | rsdmse |
|
| tensorflow | 1.5.1 | gcr.io/distroless/python2.7-debian10 |
896.176 MB | 2020-09-08 10:52:58.908871 | rsdmse |
| 2.2.0 | tensorflow/tensorflow:2.2.0-gpu-jupyter |
2.348 GB | 2022-02-01 22:46:44.541303 | rsdmse |
|
| 2.3.0 | gcr.io/distroless/python3-debian10 |
1.334 GB | 2020-08-31 18:54:16.712148 | rsdmse |
|
| 2.4.0 | gcr.io/distroless/python3-debian10 |
1.685 GB | 2020-12-14 22:02:07.989203 | rsdmse |
|
| 2.4.1 | python:3.7-slim-buster |
2.312 GB | 2022-01-28 17:55:50.007555 | rsdmse |
|
| 2.7.0 | python:3.9-slim-bullseye |
2.578 GB | 2022-01-27 20:12:13.674555 | rsdmse |
|
| 2.8.0 | python:3.9-slim-bullseye |
2.578 GB | 2022-02-15 21:56:12.820424 | rsdmse |
|
| wget2 | 2.0.0 | debian:bullseye-slim |
50.827 MB | 2021-09-28 13:46:41.713289 | rsdmse |
Note:
- App link redirects to Docker Hub repository.
- The
*.sifSingularity image size (created aftersingularity pull) is about the same as the compressed size.