/Warren_2019

plotIMC from Warren et al. 2019

Primary LanguageRApache License 2.0Apache-2.0

plotIMC

Source code for plotIMC from Warren et al. (2020) (v0.0.1).

Web version

The app can be run locally, but an alternative live instance can be found online here:

http://mito.ncl.ac.uk/warren_2019/

Local installation

To install the app locally, first download and install R, then use R to install the required dependencies (particularly Shiny):

install.packages(c("shiny","corrgram","data.table"))

Starting the shiny app

To start the app, clone this repository onto your local machine, navigate to the by_patient directory, start an R session, load the shiny library:

library(shiny)

then run the app:

runApp()

plotIMC should then open in your web browser.

Editing plotIMC

It is possible to adapt the plotIMC source code to run with a different dataset, however it does require adapting the code, and therefore requires understanding R and Shiny. plotIMC does not have a GUI for uploading different datasets.