Computational Brain Anatomy Laboratory
Computational Brain Anatomy Laboratory, located in the CIC at the Douglas Institute, McGill University
Montreal, QC
Pinned Repositories
antsRegistration-MAGeT
A reimplementation of MAGeTbrain using only ANTs tools.
atlases
Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space
documentation
Documentation for every thing, everything documented
MAGeTbrain
Multiple Automatically Generated Templates brain segmentation algorithm
minc-bpipe-library
Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines
MINC-VM
Packer built VMs with minc-toolkit and friends
optimized_antsMultivariateTemplateConstruction
A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
qbatch
RABIES
fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/
twolevel_ants_dbm
A twolevel deformation based morphometry pipeline using ants
Computational Brain Anatomy Laboratory's Repositories
CoBrALab/MAGeTbrain
Multiple Automatically Generated Templates brain segmentation algorithm
CoBrALab/documentation
Documentation for every thing, everything documented
CoBrALab/RABIES
fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/
CoBrALab/atlases
Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space
CoBrALab/qbatch
CoBrALab/optimized_antsMultivariateTemplateConstruction
A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
CoBrALab/antsRegistration-MAGeT
A reimplementation of MAGeTbrain using only ANTs tools.
CoBrALab/minc-bpipe-library
Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines
CoBrALab/twolevel_ants_dbm
A twolevel deformation based morphometry pipeline using ants
CoBrALab/UKBB-tabular-processing
Scripts to handle the tabular data associated with the UK BioBank
CoBrALab/minc-toolkit-extras
Extra miscellaneous scripts for minc-toolkit
CoBrALab/cobra-nmf
Collection of scripts for formatting vertex and/or voxel data into matrix format
CoBrALab/fMRI_phantom_analysis
CoBrALab/BSC
MRI biomarker, boundary sharpness coefficient (BSC).
CoBrALab/HitchhikersGuideToNeuroimaging
The Hitchhiker's Guide To Neuroimaging - All the things HOWTOs don't tell you
CoBrALab/MAGeTDocker
Repository with Docker Build for MAGeTBrain
CoBrALab/make_slice_images
CoBrALab/MousePhgyMetrics
Extracts various instantaneous metrics from the raw respiration and pulse oximetry traces
CoBrALab/MTR_processing
CoBrALab/ODC-Mouse-Forms
A repo containing OpenDataCapture forms for tracking mouse data gathered from experiments within the CoBra Lab
CoBrALab/RABIES_tutorial
CoBrALab/cortical_markers_paper
All code used to generate the results seen in the manuscript ____
CoBrALab/TractREC
Collection of tools to perform diffusion processing and tractography.
CoBrALab/CobraLab.github.io
Website
CoBrALab/design-choices-cca-neuroimaging
CoBrALab/iterativeN3
CoBrALab/MAGeTBrain-nextflow
CoBrALab/PyQC
Python+Qt5 Interface for quickly quality-controlling arbitrary sets of images
CoBrALab/QLS-course-materials
Materials for the 2022 NeuroDataScience Course (McGill QLSC612)
CoBrALab/WMH_Signal_AD_OParent_2023
WMH signal measures paper