CoBrALab/atlases

Unified atlas

Closed this issue · 2 comments

cfhammill commented

Would it be possible to include unified atlases for all label sets defined on the same anatomy? I know hippocampus-amygdala exists on scinet already for example.

gdevenyi commented

subcortical labels are defined on a different brain so that's not currently possible without an expert re-labelling of the 5 brains

for other label sets, the current label numbers have overlaps so we can't directly merge them without a renumbering. We have an unofficial one which we're not ready to release.

Going forward, my new MAGeT implementation can take in multiple label files per atlas, so merging won't be needed.

cfhammill commented

subcortical labels are defined on a different brain so that's not currently possible without an expert re-labelling of the 5 brains

understood

for other label sets, the current label numbers have overlaps so we can't directly merge them without a renumbering. We have an unofficial one which we're not ready to release.

seems relatively straight forward with minc_label_ops -remap

Going forward, my new MAGeT implementation can take in multiple label files per atlas, so merging won't be needed.

great! Thanks Gabe