Pinned Repositories
CobiontID.github.io
fastk-medians
Calculate median number of times each k-mer in a sequence occurs across a set
HiC_network
Group and visualise networks of interacting sequences using chromatin contacts and graph embeddings
kmer-counter
A fast k-mer counter written in Rust
MarkerScan
This repository contains a Snakemake pipeline which determines the species composition of the sample by SSU presence and separates them accordingly.
read_VAE
VAE-based framework to explore long-read datasets and identify potential contaminants or cobionts
unique-kmer-counts
Count the number of distinct k-mers in a sequence
WolbachiaSubmission
CobiontID's Repositories
CobiontID/MarkerScan
This repository contains a Snakemake pipeline which determines the species composition of the sample by SSU presence and separates them accordingly.
CobiontID/CobiontID.github.io
CobiontID/fastk-medians
Calculate median number of times each k-mer in a sequence occurs across a set
CobiontID/HiC_network
Group and visualise networks of interacting sequences using chromatin contacts and graph embeddings
CobiontID/kmer-counter
A fast k-mer counter written in Rust
CobiontID/read_VAE
VAE-based framework to explore long-read datasets and identify potential contaminants or cobionts
CobiontID/unique-kmer-counts
Count the number of distinct k-mers in a sequence
CobiontID/WolbachiaSubmission