Pinned Repositories
a.thaliana
repository for a.thaliana postdoctoral project
AUPR_network
usage: Script to compute the Area Under Precision-Recall curve based in a reference and a GENIE3 inferred network.
bacteria_GRN
binarizeDF
a simple function for binarize a python df
cytoscape-app-samples
Cytoscape 3 sample code for App developers.
human_reference_net
a general regulatory network for human based on regnetwork dorothea and trrust
makeNet
makeNet script to filter human/mouse regnetwork due a TF list file
mouse_reference_net
the merged network of regnetwork, dorothea and trrust (only high quality)
RIP-MD
RIP-MD3
RIP-MD to be used under python3
Cold7's Repositories
Cold7/human_reference_net
a general regulatory network for human based on regnetwork dorothea and trrust
Cold7/makeNet
makeNet script to filter human/mouse regnetwork due a TF list file
Cold7/mouse_reference_net
the merged network of regnetwork, dorothea and trrust (only high quality)
Cold7/RIP-MD3
RIP-MD to be used under python3
Cold7/a.thaliana
repository for a.thaliana postdoctoral project
Cold7/AUPR_network
usage: Script to compute the Area Under Precision-Recall curve based in a reference and a GENIE3 inferred network.
Cold7/bacteria_GRN
Cold7/binarizeDF
a simple function for binarize a python df
Cold7/test
learning git/github
Cold7/boostrap_from_df
make subDF for boostrapping from a single dataframe (using tsv file)
Cold7/Cold7
Config files for my GitHub profile.
Cold7/Cold7.github.io
Cold7/datascience
A reporsitory to sumarize datascience techniques
Cold7/deep-learning-course
Cold7/explore_ensembl_104
Cold7/filtering-GENIE3-results
Cold7/FRiP
Compute FRiP score for ATAC and ChIP seq experiments
Cold7/gene_search_in_pubmed
a simple script that perform a searching of genes of interest in pubmed
Cold7/get_adapters
simple python script to detect adapters from fastqc html reports and report it to save as a fasta file
Cold7/gtf2dict
a simple python3 function that take the gtf file name and return a protein coding gene dictionary
Cold7/Jindex
a simple script to compute Jaccard index between two networks (in gml format)
Cold7/KNN_tutorial
tutorial del algoritmo KNN para estudiantes del liceo comercial
Cold7/mean_roc_pr
scripts to generate mean roc and pr curves for a dataset
Cold7/obo2graph
a simple notebook to parse OBO file (for GO terms) into a graph.
Cold7/search_master_regulators
Cold7/split_chr
A simple script to separate a whole genome into chrs
Cold7/tesis_doctoral
repositorio para los scripts desarrollados durante la tesis doctoral
Cold7/translateFromEnsembl
simple script to translate between geneID/transcriptID/genesymbol
Cold7/TSS_mouse_mm10
A 3 columns tss file for mm10 genome
Cold7/whisper
Robust Speech Recognition via Large-Scale Weak Supervision