Pinned Repositories
admb
AD Model Builder
adnuts
An R package for NUTS sampling using ADMB
bootstrap_retro
Using bootstrapping to inform interpretation of retrospective bias statistics
dsem
Dynamic structural equation models
FishStatsUtils
Shared resources for spatio-temporal models
gengamma_indices
Generalized gamma indices in stock assessments: beyond the lognormal
mixed_resids
Residual analysis for spatial models
PIT_comp_resids
Exploring PIT residuals for compositional data in stock assessments
shinystan
shinystan R package and ShinyStan GUI
stpollock
A spatio-temporal CPUE analysis combining bottom and acoustic trawl survey data for pollock
Cole-Monnahan-NOAA's Repositories
Cole-Monnahan-NOAA/adnuts
An R package for NUTS sampling using ADMB
Cole-Monnahan-NOAA/mixed_resids
Residual analysis for spatial models
Cole-Monnahan-NOAA/stpollock
A spatio-temporal CPUE analysis combining bottom and acoustic trawl survey data for pollock
Cole-Monnahan-NOAA/admb
AD Model Builder
Cole-Monnahan-NOAA/bootstrap_retro
Using bootstrapping to inform interpretation of retrospective bias statistics
Cole-Monnahan-NOAA/dsem
Dynamic structural equation models
Cole-Monnahan-NOAA/FishStatsUtils
Shared resources for spatio-temporal models
Cole-Monnahan-NOAA/gengamma_indices
Generalized gamma indices in stock assessments: beyond the lognormal
Cole-Monnahan-NOAA/PIT_comp_resids
Exploring PIT residuals for compositional data in stock assessments
Cole-Monnahan-NOAA/shinystan
shinystan R package and ShinyStan GUI
Cole-Monnahan-NOAA/sparse_nuts
Sparse metrics for no-U-turn sampling in TMB models
Cole-Monnahan-NOAA/stock-synthesis
The source code for stock synthesis
Cole-Monnahan-NOAA/TMB_v_Julia
Compare Julia and TMB for mixed effects models
Cole-Monnahan-NOAA/tmb_workshop
Univ Concepción (Chile), 15-19 Jan 2018. Fitting hierarchical models in TMB. Instructor: Cole Monnahan
Cole-Monnahan-NOAA/VAST
Spatio-temporal analysis of univariate or multivariate data, e.g., standardizing data for multiple species or stages
Cole-Monnahan-NOAA/wham
State-space, age-structured fish stock assessment model