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getting_started - This getting_started shows how to access the footprint databases and provides a case example for query.
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Followings are the supplementary information that these directories contains workflows and scripts used to generate DNase footprint, TF binding motif, and database.
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generate_footprints - This generate_footprints provide an instruction for how to run the DNAse footprinting workflow and include a demo snapshot.
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generate_motif - This generate_motif directory is a guideline if one needs to create transcription factor motifs. The motif file is used for annotating the footprints.
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generate_db - The generate_db directory shows a step-by-step procedure along with the processing code to intersect hint or wellington] footprints output with the FIMO database and put the results in a database.
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