Pinned Repositories
assembly_RNAseq_without_refgenome
this pipe composed by several perl scripts was mainly used to assembly RNA_seq
Augustus
Genome annotation with AUGUSTUS
awesome-bioinformatics-tools
A curated list of awesome Bioinformatics software, tools and resources
bamtools
C++ API & command-line toolkit for working with BAM data
biopyfig
bioinformation python figure
bootstrap
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
cactus
Official home of genome aligner based upon notion of Cactus graphs
Comparative-Annotation-Toolkit
DESCHRAMBLER
Papaver-Genomics
The genomic data for Papaver species
CrawlingSponge's Repositories
CrawlingSponge/Papaver-Genomics
The genomic data for Papaver species
CrawlingSponge/assembly_RNAseq_without_refgenome
this pipe composed by several perl scripts was mainly used to assembly RNA_seq
CrawlingSponge/Augustus
Genome annotation with AUGUSTUS
CrawlingSponge/awesome-bioinformatics-tools
A curated list of awesome Bioinformatics software, tools and resources
CrawlingSponge/cactus
Official home of genome aligner based upon notion of Cactus graphs
CrawlingSponge/Comparative-Annotation-Toolkit
CrawlingSponge/DESCHRAMBLER
CrawlingSponge/dfoil
DFOIL: Introgression Testing for Five Taxa
CrawlingSponge/EVAGAN
The repository is dedicated to Evasion Generative Adversarial Network source code.
CrawlingSponge/EVidenceModeler
source code for EVM
CrawlingSponge/extract-seq-from-big_genome
extract dna seq from big-genomes based blast results with your query sequences
CrawlingSponge/extract_longest_mRNA
since the annotated gene always possesses more than one copy of mRNA, and we need to use a sequence of CDS to represent its gene sequce, so we need to extract the longest mRNA or CDS to perform the following analysis. here the script is suitble for extracting the sequence
CrawlingSponge/GAAS
Genome Assembly and Annotation Service code
CrawlingSponge/GenomeSyn
We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a necessary complement to the study of genomic synteny and structural variation and its visualization tools.
CrawlingSponge/genomethreader
GenomeThreader gene prediction software.
CrawlingSponge/geta
CrawlingSponge/Guideline-for-Computational-Biology-and-Bioinformatics
CrawlingSponge/Jstacs
CrawlingSponge/libjson-rpc-cpp
C++ framework for json-rpc (json remote procedure call)
CrawlingSponge/my_script
The scripts wrote by my self
CrawlingSponge/NGenomeSyn
Any Way to Show Multi genomic Synteny
CrawlingSponge/orfipy
Fast and flexible ORF finder
CrawlingSponge/PASApipeline
PASA software
CrawlingSponge/perl1line.txt
collection of handy perl one-liner scripts
CrawlingSponge/ProtParCon
An application framework for manipulating molecular data and identifying parallel and convergent amino acid replacements at the molecular level.
CrawlingSponge/PseudogenePipeline
CrawlingSponge/Scripts
CrawlingSponge/STAR
RNA-seq aligner
CrawlingSponge/stringtie
Transcript assembly and quantification for RNA-Seq
CrawlingSponge/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly