Pinned Repositories
2017-07-24-chicago
Intermediate R Software Carpentry Workshop
BeQ2L
Free and Open source implementation of Bootstrap eQTL
EigenH5
New HDF5 interface using HighFive
FGEM
Functional GWAS by Expectation Maximization
IntroWorkshopTemplate
workshop website
ldmap
Manipulate and Interpolate Genetic Map Data
mach2h5
tool for converting mach formatted vcf files to hdf5
MatrixeQTLGLM
MatrixEQTL with GLM
r-intermediate-altmetrics
A 2-day workshop on intermediate-level programming with R
RColumbo
R package for investigating expression level mediation of GWAS association
CreRecombinase's Repositories
CreRecombinase/ldmap
Manipulate and Interpolate Genetic Map Data
CreRecombinase/arrow
Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing
CreRecombinase/batchtools
Tools for computation on batch systems
CreRecombinase/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
CreRecombinase/cachem
Key-value caches for R
CreRecombinase/cgranges
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
CreRecombinase/cpp11
cpp11 helps you to interact with R objects using C++ code.
CreRecombinase/data.table
R's data.table package extends data.frame:
CreRecombinase/datasync
A wrapper utility for rclone to allow for yaml based config management of data transfers you intend to reuse.
CreRecombinase/duckdb-web
DuckDB-Web - Source code of duckdb.org
CreRecombinase/GeneGPT
Code and data for GeneGPT.
CreRecombinase/glow
An open-source toolkit for large-scale genomic analysis
CreRecombinase/granges
CreRecombinase/htslib
C library for high-throughput sequencing data formats
CreRecombinase/ieugwasr
R interface to the IEU GWAS database API
CreRecombinase/latent-scope
A scientific instrument for investigating latent spaces
CreRecombinase/Leeds-Flipper-Zero-Applications
CreRecombinase/liftover
liftover for python, made fast with cython
CreRecombinase/nba-monte-carlo
Monte Carlo simulation of the NBA season, leveraging meltano, dbt, duckdb and superset
CreRecombinase/noodles
Bioinformatics I/O libraries in Rust
CreRecombinase/officer
:cop: officer: office documents from R
CreRecombinase/r-base-shortcuts
⚡ Base R shortcuts: A collection of lesser-known but powerful idioms and coding patterns for writing concise and fast R code
CreRecombinase/SBayesRC
CreRecombinase/snakemake-executor-plugin-azure-batch
A Snakemake executor plugin for submitting jobs to Microsoft Azure Batch.
CreRecombinase/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
CreRecombinase/spackenv
spack environment interface for Emacs
CreRecombinase/sysinfo
Cross-platform library to fetch system information
CreRecombinase/vilma
polygenic scores using variational inference on GWAS summary statistics from multiple cohorts
CreRecombinase/vilmor
Vilmor :vulcan_salute: - Recipe generator for Spack
CreRecombinase/vroom
Fast reading of delimited files