/snakemake-slurm-profiles

Configuration profiles for running snakemake on a SLURM server

Primary LanguagePython

snakemake-slurm-profiles

99.9% of the scripts content comes from https://github.com/Snakemake-Profiles/slurm

0.1% of the edits come from the Cambridge snakemake SLURM integration working group

I have added an anonymised config file called configAnonymised.yaml. For your config file, it should be called config.yaml

If you so wish, you can limit the number of threads used by a job in the slurm-submit.py file.