Pinned Repositories
AnnoSINE_v2
SINE annotation tool for plant genomes
assembly-stats
Assembly statistic visualisation
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bacterial-genomics-tutorial
bioinformatics-workbook
Bioinformatics Workbook repository
BioinfTraining
Repository for bioinformatics training at the Norwegian Veterinary Institute
blobtoolkit
Interactive quality assessment of genome assemblies
CAFE
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
ccs
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Crowmane420's Repositories
Crowmane420/AnnoSINE_v2
SINE annotation tool for plant genomes
Crowmane420/assembly-stats
Assembly statistic visualisation
Crowmane420/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Crowmane420/bacterial-genomics-tutorial
Crowmane420/bioinformatics-workbook
Bioinformatics Workbook repository
Crowmane420/blobtoolkit
Interactive quality assessment of genome assemblies
Crowmane420/CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Crowmane420/data_graphing
ready-made python-Plotly applications for data visualization
Crowmane420/datascience-workbook
Tutorials and introduction to linux and high performance computing
Crowmane420/EDTA
Extensive de-novo TE Annotator
Crowmane420/Genome_fasta_modifiers
Crowmane420/genometools
GenomeTools genome analysis system.
Crowmane420/GlimmaV2
interactive plots for differential expression analysis
Crowmane420/idepGolem
Crowmane420/intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
Crowmane420/karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
Crowmane420/LongQC
LongQC is a tool for the data quality control of the PacBio and ONT long reads.
Crowmane420/MitoHiFi
Find, circularise and annotate mitogenome from PacBio assemblies
Crowmane420/my-script
Crowmane420/OHCA
Orchestrating Hi-C analysis with Bioconductor
Crowmane420/Pd_Fs_Transcriptomics
Crowmane420/plotgardener
Crowmane420/rapt
Read Assembly and Annotation Pipeline Tool
Crowmane420/RNA-Seq_Time_series
R code for analyzing time point RNA-Seq data using Deseq2
Crowmane420/rnabio.org
website for the rnaseq course
Crowmane420/Scan
Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data
Crowmane420/sciCSR
Single-Cell Inference of Class Switch Recombination
Crowmane420/telomeric-identifier
Identify and find telomeres, or telomeric repeats in a genome.
Crowmane420/wesanderson
A Wes Anderson color palette for R
Crowmane420/yahs
Yet another Hi-C scaffolding tool