Chromatin and Gene Regulatory Dynamics of Optic Nerve Invasion in Retinoblastoma at Single-Cell Resolution
This repository contains all the code currently used in the study that in submitting: Yihan Z et al. Chromatin and Gene Regulatory Dynamics of Optic Nerve Invasion in Retinoblastoma at Single-Cell Resolution.
The annotated data that we used in this study are available in the Figshare.
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The scRNA-seq data for retinoblastoma is stored in the following URL: https://figshare.com/articles/dataset/rna_anno_h5ad/22548397
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The scATAC-seq data for retinoblastoma is stored in the following URL: https://figshare.com/articles/dataset/rna_anno_h5ad/22548391
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The motif-counts-matrix data for retinoblastoma is stored in the following URL: https://figshare.com/articles/dataset/motif_anno_h5ad/22548388
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The annotated scRNA-seq data that we use to verify the reliability of the conclusion is stored in the following URL:https://figshare.com/articles/dataset/val_rna_anno/22548478
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The codes in the
main
file are formain analysis
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The codes in the
supplementary
file are forsupplement analysis