Pinned Repositories
caffeine-bootstrap
caffeine-tombstone
Placeholder website with information on what happened to Caffeine
caffeine-vue
Caffeine frontend, a state-of-the-art web platform which puts model-guided and data-driven design into practice in industrial biotechnology.
cookiecutter-flask-microservice
A cookiecutter template for creating microservices with Flask-RESTPlus.
id-mapper
ID mapper for biological entities (metabolites, reactions, genes, etc)
memote-service-frontend
Vue single page application for uploading models and viewing reports.
memote-webservice
The backend for the MEMOTE web service.
simulations
Model service which takes care of adjusting model according to incoming messages and returns information such as fluxes, theoretical maximum yields, etc
tutorials
Teaching materials for cobrapy, cameo, escher and DD-DeCaF
warehouse
The storage for the experimental data used for modeling: omics, strains, media etc
Data-Driven Design of Cell Factories and Communities's Repositories
DD-DeCaF/tutorials
Teaching materials for cobrapy, cameo, escher and DD-DeCaF
DD-DeCaF/id-mapper
ID mapper for biological entities (metabolites, reactions, genes, etc)
DD-DeCaF/caffeine-vue
Caffeine frontend, a state-of-the-art web platform which puts model-guided and data-driven design into practice in industrial biotechnology.
DD-DeCaF/caffeine-bootstrap
DD-DeCaF/cookiecutter-flask-microservice
A cookiecutter template for creating microservices with Flask-RESTPlus.
DD-DeCaF/memote-service-frontend
Vue single page application for uploading models and viewing reports.
DD-DeCaF/caffeine-angular
DD-DeCaF/caffeine-tombstone
Placeholder website with information on what happened to Caffeine
DD-DeCaF/iam
Identity and access management
DD-DeCaF/metabolic-ninja
Predict heterologous pathways for the given organism and chemical of interest
DD-DeCaF/design-storage
DD-DeCaF/map-storage
DD-DeCaF/memote-webservice
The backend for the MEMOTE web service.
DD-DeCaF/simulations
Model service which takes care of adjusting model according to incoming messages and returns information such as fluxes, theoretical maximum yields, etc
DD-DeCaF/warehouse
The storage for the experimental data used for modeling: omics, strains, media etc
DD-DeCaF/website
DD-DeCaF Website
DD-DeCaF/bigg-proxy
Simple nginx proxy in and the corresponding Dockerfile to relay calls securely to the bigg API
DD-DeCaF/caffeine-vue-upload-mockup
DD-DeCaF/cloudsql-proxy
DD-DeCaF/contributions
Measure code contributions to a GitHub organization's repositories.
DD-DeCaF/escher
Build, view, share, and embed pathway maps.
DD-DeCaF/metanetx
DD-DeCaF/model-storage
The storage for metabolic models used by the platform
DD-DeCaF/modeling-base
Base Docker image(s) for metabolic modeling with proprietary solvers.
DD-DeCaF/pip-compile
A minimal Docker image that provides pip-tools in order to lock Python dependencies.
DD-DeCaF/postgres-base
Base Docker image for WSGI microservices with postgres dependencies.
DD-DeCaF/prometheus
DD-DeCaF/tag-spy
Identify the latest DD-DeCaF tag on a particular Docker image.
DD-DeCaF/tag-spy-docker
Provide the tag-spy tool in a minimal Python 3.7 Docker image.
DD-DeCaF/wsgi-base
Base Docker image(s) for WSGI microservices in the DD-DeCaF organization