Pinned Repositories
CpGdensity
CpGdensity
GetisDMR
labResources
some thoughts and ideas about how to manage our lab, how to let people to cooperate and collaborate in a more efficient way
MutHeatmap
Mutation heatmap with multiple mutation types
pTrimmer
Used to trim off the primer sequence from mutiplex amplicon sequencing
setup-centos7
one script setup centos7
tagmeth
tag based methylation analyse.
Targeted-Sequencing-Pipeline
unique-sam
SAM file duplicated alignments remover.
workSummary
summarization of lab works
DMU-lilab's Repositories
DMU-lilab/pTrimmer
Used to trim off the primer sequence from mutiplex amplicon sequencing
DMU-lilab/GetisDMR
DMU-lilab/MutHeatmap
Mutation heatmap with multiple mutation types
DMU-lilab/CpGdensity
CpGdensity
DMU-lilab/labResources
some thoughts and ideas about how to manage our lab, how to let people to cooperate and collaborate in a more efficient way
DMU-lilab/setup-centos7
one script setup centos7
DMU-lilab/tagmeth
tag based methylation analyse.
DMU-lilab/Targeted-Sequencing-Pipeline
DMU-lilab/unique-sam
SAM file duplicated alignments remover.
DMU-lilab/workSummary
summarization of lab works
DMU-lilab/asm-pipeline
allen specific methylation analyse pipline (based on tagmeth indexing method)
DMU-lilab/CancerGenomics
Some useful tools for cancer genome processing developed by Li lab
DMU-lilab/cfDNA
DMU-lilab/CpGDenLowess
DMU-lilab/decodekmer
decode kmer
DMU-lilab/DNAMethylation
DMU-lilab/Ecoli
Improved Duplex Sequencing
DMU-lilab/filter-reads
Filter alignment reads according to two SNP databases.
DMU-lilab/fraglen
get the fragment length from reads and plot fragment length distribution
DMU-lilab/gb-localization
genome browser local installation
DMU-lilab/gbscripts
gb service scripts
DMU-lilab/lab-script
some script that lab net-manager use frequently.
DMU-lilab/libsam
sam file related libraries.
DMU-lilab/methyutils
This is R package for analyzing DNA methylation
DMU-lilab/mtbr-pipeline
mtbr-pipline
DMU-lilab/PlasmaMutationDetectorForLilab
Tumor Mutation Detection in Plasma For Li lab (in linux)
DMU-lilab/rmdup
Remove duplicated alignments in the mapping files.
DMU-lilab/roc
roc curve generator
DMU-lilab/seqdb-dockerfile
seqdb dockerfile