DOI-USGS/streamMetabolizer
streamMetabolizer uses inverse modeling to estimate aquatic metabolism (photosynthesis and respiration) from time series data on dissolved oxygen, water temperature, depth, and light.
StanNOASSERTION
Issues
- 1
calc_light_merged throws deprecated error
#434 opened by spencer-tassone - 2
- 13
package is not available (for R version 3.3.2)
#416 opened by mlbrooks - 1
Bayes metab issues
#418 opened by miralha - 4
Bayes modeling not working?
#417 opened by woodwardb1 - 2
NOTICE: upcoming default branch name change
#411 opened by jesse-ross - 1
Update disclaimer
#369 opened by ldecicco-USGS - 1
Errors: vector memory exhausted (limit reached?)
#404 opened by robohall - 0
Starting DO values for predict_DO
#415 opened by aaroncpelly - 1
Non-Zero Exit Status
#414 opened by Justin495 - 6
Incompatibility new release R 4.1.0
#409 opened by sophieguillon - 1
Strong relationship ER and K600.
#408 opened by demelo-limno - 2
Package has not been updated for R Version 3.6.1
#407 opened by agcfzk - 0
SYNTAX ERROR, MESSAGE(S) FROM PARSER when editing the ER function in the metab_bayes to (q10temp)
#406 opened by amina-uwa - 0
MLE GPP_fun='satlightq10temp' : issue with GPP (GPP=0, no initialization)
#405 opened by sophieguillon - 0
tidyverse deprecations
#402 opened by aappling-usgs - 1
Installation concern
#401 opened by mclean-154 - 0
metab_night calc of metabolism giving NA's
#400 opened by AbigailUVM - 0
Positive Estimating of ER
#399 opened by Jakob10er - 0
Error in get_params.metab_model(object, uncertainty = "ci", fixed = "stars", : can't find metabolism parameters GPP.daily, ER.daily, K600.daily
#398 opened by AbigailUVM - 0
- 6
- 3
How to fill missing input data
#388 opened by kqasem - 2
Data preperation
#396 opened by Jakob10er - 2
Issues with "streamMetabolizer" data format?
#395 opened by nuwanma1986 - 2
Calculate light data for entire 'solar.time' column instead doing one by one?
#394 opened by nuwanma1986 - 5
Model estimation of model dissolved oxygen cuts off between days + dO/dt units check
#393 opened by amina-uwa - 0
can not run streamMetabolism successfully (do not know how to convert 'unique(data_all$date)' to class “Date”)
#392 opened by JunjieLiu-WHU-UWA - 2
DO.mod in predict_DO for Bayesian model
#391 opened by Tzu-Yao - 14
- 7
How To Test The Goodness of The Model
#389 opened by kqasem - 1
Unable to grab example data frames
#383 opened by dmcostello - 3
Calculation of SD and CI in get_params
#381 opened by PsaltakisJ - 2
Addressing model warnings and errors
#379 opened by emjbarrie - 0
predict_metab omits MLE errors
#380 opened by aappling-usgs - 3
- 2
adjustments for gpp process error
#377 opened by aappling-usgs - 4
add Bayesian light saturation model
#371 opened by aappling-usgs - 10
Setting priors for K
#373 opened by samlbickley - 2
Fixing K for bayes
#372 opened by brodonnell - 1
what does "overall warnings" mean?
#362 opened by Kelsman28 - 1
issue with get_units, new user
#352 opened by akdodd - 14
wrong DO.sat predictions / positive ER estimates
#367 opened by mluerig - 1
Hourly data for streamMetabolizer
#368 opened by CasieSmith - 1
MLE model works with example data but bayes model does not because "can't find metabolism parameters GPP.daily, ER.daily, K600.daily"
#359 opened by Kelsman28 - 15
Error in c(x, sep = "\r") : could not find symbol "recursive" in environment of the generic function
#337 opened by mluerig - 0
- 0
plot_DO_preds is breaking with dygraphs
#344 opened by aappling-usgs - 2
Number of rows for different dates
#336 opened by berdaniera - 0
label daily preds unc as SE, not SD
#335 opened by aappling-usgs