Pinned Repositories
Adult_Foetal_Epicardial_Comparison_2022
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
banovichlab
Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
BaSISS
Code for the "Spatial genomics maps the structure, character and evolution of cancer clones" paper
celltypist
A tool for semi-automatic cell type annotation
chicken_heart
Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis
dandelion
dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
FastIntegration
FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
FG-Lab
gtex-single-nucleus-reference
Code repository for the snRNA-seq cross-tissue atlas project
DRSEI's Repositories
DRSEI/Adult_Foetal_Epicardial_Comparison_2022
DRSEI/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
DRSEI/banovichlab
Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
DRSEI/BaSISS
Code for the "Spatial genomics maps the structure, character and evolution of cancer clones" paper
DRSEI/celltypist
A tool for semi-automatic cell type annotation
DRSEI/chicken_heart
Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis
DRSEI/dandelion
dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
DRSEI/FastIntegration
FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
DRSEI/gtex-single-nucleus-reference
Code repository for the snRNA-seq cross-tissue atlas project
DRSEI/humanpdac
single cell analysis of treatment naive and treated human PDAC
DRSEI/Hurley2022scRNA
Code for prostate cancer paper
DRSEI/Ibex
BCR
DRSEI/ktplotspy
Python library for plotting Cellphonedb results. Ported from ktplots R package.
DRSEI/Mouse_brain_borders_NatureProtocols
DRSEI/ncem_benchmarks
DRSEI/neoantigen-specific-T-cells-NSCLC
DRSEI/notebooks
Cellular Genetics Informatics Notebooks
DRSEI/pathml
Tools for computational pathology
DRSEI/PDAC
DRSEI/plot1cell
DRSEI/prostateimmuneatlas
single-cell RNAseq analysis notebooks accompanying Tuong et al.
DRSEI/REDSEA
DRSEI/SCP
Single Cell Pipeline
DRSEI/scPLC
Codes for the scPLC project
DRSEI/segmentation
End-to-end pipeline for segmenting cell nuclei on histology slides
DRSEI/singularitycontainers-on-m1-arm64
This is a repository containing a ready-to-use environment for singularity in arm64 (Apple M1).
DRSEI/Stroma01
DRSEI/TissueImmuneCellAtlas
DRSEI/Tumor-Immune-Cell-Atlas
Code repository for the Tumor Immune Cell Atlas (TICA) project
DRSEI/workshop-scRNAseq
Single cell RNA sequencing analysis course