Issue with centrifuge-download (dustmaster: command not found)
Closed this issue · 3 comments
Hi there,
I am trying to download archaeal, bacterial, fungal and viral genomes into a library using the following command:
centrifuge-download -o library -m -d "archaea,bacteria,viral,fungi" refseq > seqid2taxid.map
The library folders are being created in my centrifuge folder, along with the .fna files.
However, the fna files are empty - and the following error appears
line28: dustmaster: command not found
This is my first time using linux so I am very new! Im not sure why this is coming up and I cant find any help online -
Could someone please point me in the right direction of what is going wrong? - and how I can fix this issue?
Any help would be greatly appreciated! Thanks in advance!
you can install by conda, like :
conda install -c bioconda blast
you can find dustmaster in your conda env
Great thank you!