DaehwanKimLab/centrifuge

Issues

• Issues with Centrifuge Output for Functional Annotation

  #282 opened 4 months ago by PoojaThummar
  2

• centrifuge-kreport values do not ad

  #276 opened 6 months ago by pablorr24
  3

• centrifuge-inspect python script is incompatible with python >=3.12

  #281 opened 5 months ago by papanikos
  2

• Viral new File format?

  #280 opened 5 months ago by mwylerCH
  4

• Centrifuge Classifying Reads, but the Report is Empty

  #279 opened 5 months ago by echolley31
  3

• Couldn't find parent of taxID 138 - directly assigned to root.

  #278 opened 5 months ago by davidmadariaga
  6

• nt index incomplete build

  #275 opened 8 months ago by igordot
  21

• how do i setup the SILVA database?

  #277 opened 6 months ago by davidmadariaga
  4

• NCBI nt index

  #273 opened 8 months ago by igordot
  6

• Database problem

  #270 opened 10 months ago by ADelacuv
  1

• option --packed

  #274 opened 8 months ago by mwylerCH
  0

• Database question

  #271 opened 9 months ago by SergeyBaikal
  10

• Can using "--mm" flag reduce memory usage?

  #272 opened 9 months ago by nzx9581
  2

• ERROR): Expected centrifuge to be in same directory with centrifuge-class:

  #269 opened 10 months ago by CDX-bioinformatics
  2

• Unrecognised `--temp-directory` option, however specified in code?

  #268 opened 10 months ago by jfy133
  9

• M. tuberculosis genome size error

  #267 opened 10 months ago by DOH-KEW4303
  0

• Database download for Centrifuge

  #242 opened 2 years ago by ramnageena11
  223

• not able to build database, taxonomy does not exist warnings, latest version by git

  #266 opened 10 months ago by koppk
  1

• Database download taking a lot of disk space + taking too long

  #265 opened 10 months ago by pablorr24
  3

• centrifuge download fails

  #263 opened a year ago by ggonnella
  2

• The second file of customer db is empty

  #264 opened a year ago by LilyAnderssonLee
  4

• Where are you Sulfobacillus?

  #255 opened 2 years ago by DntBScrdDv
  33

• Error downloading centrifuge databases

  #262 opened a year ago by RayanaFeltrin
  11

• how to make seqid2taxid.map

  #259 opened a year ago by DAWNkKim
  1

• centrifuge k-report not conforming to pavian

  #240 opened 2 years ago by lewhiteside
  4

• Error when downloading only bacteria version

  #260 opened a year ago by dafin678
  3

• Error when executing centrifuge "Argument list too long"

  #258 opened 2 years ago by BenjaminJPerry
  4

• error in make

  #256 opened 2 years ago by kkkkksw
  0

• Centrifuge Database Download Error

  #245 opened 2 years ago by DanMan-09
  6

• Custom database including only specific organisms for reads separation?

  #257 opened 2 years ago by AMK06-1993
  0

• Error compiling on macOS ventura

  #250 opened 2 years ago by vicho33
  1

• make p_compressed = "could not find jellyfish"

  #254 opened 2 years ago by DntBScrdDv
  1

• Use of the "make" command

  #233 opened 3 years ago by tbazilegith
  1

• Classification filtering only virus/archaea sequences

  #247 opened 2 years ago by NINADCROCHA
  1

• Unusual abundance results with custom classifier index

  #252 opened 2 years ago by hirosatosd
  6

• Calculate abundance without genome size taken into account

  #253 opened 2 years ago by pjtorres
  0

• Unable to use sudo make install prefix=/usr/local

  #251 opened 2 years ago by JBriel1
  4

• Print (un)classified sequences

  #243 opened 2 years ago by namnh7
  1

• Warning: Encountered reference sequence with only gaps

  #249 opened 2 years ago by wittler-github
  2

• (ERR): centrifuge-class exited with value 1

  #244 opened 2 years ago by ramnageena11
  4

• Issues with --nodc, --justref and --noref parameters

  #248 opened 2 years ago by darko-cucin
  0

• number of cpus detection :: possible oversubcribe problems

  #246 opened 2 years ago by EricDeveaud
  2

• viral bacteria and archaea DB now very large >60G

  #241 opened 2 years ago by PaulAONeill
  3

• Does not compile using g++ 10

  #234 opened 3 years ago by dchandran-sgmo
  1

• Error in centrifuge-download

  #239 opened 3 years ago by csaucar
  2

• centrifuge-build fails for unknown reason - Again

  #236 opened 3 years ago by jsonProgram
  2

• centrifuge-inspect throws SyntaxError error

  #238 opened 3 years ago by phlatphish
  2

• Issue with centrifuge-download (dustmaster: command not found)

  #237 opened 3 years ago by lewhiteside
  3

• Does not compile using g++ 10

  #235 opened 3 years ago by dchandran-sgmo
  2

• How to build a custom index (compression)?

  #232 opened 3 years ago by linjiahao962889027
  2